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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
2dg3 RAP Peptidyl-prolyl cis-trans isomerase FKBP1A 5.2.1.8

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
2dg3 RAPPeptidyl-prolyl cis-trans isomerase FKBP1A 5.2.1.8 1.092
1fkb RAPPeptidyl-prolyl cis-trans isomerase FKBP1A 5.2.1.8 1.071
1nsg RADPeptidyl-prolyl cis-trans isomerase FKBP1A 5.2.1.8 1.037
1nsg RADSerine/threonine-protein kinase mTOR 2.7.11.1 1.037
2fap RADPeptidyl-prolyl cis-trans isomerase FKBP1A 5.2.1.8 1.037
2fap RADSerine/threonine-protein kinase mTOR 2.7.11.1 1.037
1c9h RAPPeptidyl-prolyl cis-trans isomerase FKBP1B 5.2.1.8 1.029
2dg4 RAPPeptidyl-prolyl cis-trans isomerase FKBP1A 5.2.1.8 1.017
1fkl RAPPeptidyl-prolyl cis-trans isomerase FKBP1A 5.2.1.8 1.013
4qt3 RAPPeptidylprolyl isomerase / 1.011
1fap RAPPeptidyl-prolyl cis-trans isomerase FKBP1A 5.2.1.8 1.010
1fap RAPSerine/threonine-protein kinase mTOR 2.7.11.1 1.010
2dg9 RAPPeptidyl-prolyl cis-trans isomerase FKBP1A 5.2.1.8 0.989
4fap ARDPeptidyl-prolyl cis-trans isomerase FKBP1A 5.2.1.8 0.943
4fap ARDSerine/threonine-protein kinase mTOR 2.7.11.1 0.943
4drh RAPSerine/threonine-protein kinase mTOR 2.7.11.1 0.899
4drh RAPPeptidyl-prolyl cis-trans isomerase FKBP5 5.2.1.8 0.899
1tco FK5Peptidyl-prolyl cis-trans isomerase FKBP1A 5.2.1.8 0.830
1tco FK5Serine/threonine-protein phosphatase 2B catalytic subunit alpha isoform 3.1.3.16 0.830
1fkj FK5Peptidyl-prolyl cis-trans isomerase FKBP1A 5.2.1.8 0.824
1qpf 858Peptidyl-prolyl cis-trans isomerase FKBP1A 5.2.1.8 0.822
2fke FK5Peptidyl-prolyl cis-trans isomerase FKBP1A 5.2.1.8 0.821
1bkf FK5Peptidyl-prolyl cis-trans isomerase FKBP1A 5.2.1.8 0.819
4dz2 FK5Peptidyl-prolyl cis-trans isomerase / 0.817
3o5r FK5Peptidyl-prolyl cis-trans isomerase FKBP5 5.2.1.8 0.806
1fkf FK5Peptidyl-prolyl cis-trans isomerase FKBP1A 5.2.1.8 0.804
4dh0 MR8Peptidyl-prolyl cis-trans isomerase FKBP1A 5.2.1.8 0.796
1qpl 587Peptidyl-prolyl cis-trans isomerase FKBP1A 5.2.1.8 0.793
2vn1 FK5Peptidylprolyl isomerase / 0.789
1fkd 818Peptidyl-prolyl cis-trans isomerase FKBP1A 5.2.1.8 0.776
1fki SB1Peptidyl-prolyl cis-trans isomerase FKBP1A 5.2.1.8 0.758
3ihz FK5Peptidylprolyl isomerase / 0.756
1fkg SB3Peptidyl-prolyl cis-trans isomerase FKBP1A 5.2.1.8 0.745
4odo FK5Peptidyl-prolyl cis-trans isomerase / 0.738
1q6i FK5FKBP-type peptidyl-prolyl cis-trans isomerase FkpA 5.2.1.8 0.730
1a7x FKAPeptidyl-prolyl cis-trans isomerase FKBP1A 5.2.1.8 0.686
4drm 0MCPeptidyl-prolyl cis-trans isomerase FKBP5 5.2.1.8 0.672
4dro 0MDPeptidyl-prolyl cis-trans isomerase FKBP5 5.2.1.8 0.657