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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
2ddo ATP Pyridoxine/pyridoxal/pyridoxamine kinase

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
2ddo ATPPyridoxine/pyridoxal/pyridoxamine kinase / 0.934
2j0l ANPFocal adhesion kinase 1 2.7.10.2 0.682
5eg3 ACPFibroblast growth factor receptor 2 / 0.655
4i3z ADPCyclin-dependent kinase 2 2.7.11.22 0.652
2pzp ACPFibroblast growth factor receptor 2 / 0.651
4cki ADNProto-oncogene tyrosine-protein kinase receptor Ret 2.7.10.1 0.651
4aw1 ATP3-phosphoinositide-dependent protein kinase 1 2.7.11.1 0.650
4q4c ADPInositol hexakisphosphate and diphosphoinositol-pentakisphosphate kinase 2 / 0.650