Logo scPDB

sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

Logo CNRS Logo Unistra
Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
2daa DCS D-alanine aminotransferase 2.6.1.21

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
2daa DCSD-alanine aminotransferase 2.6.1.21 0.955
3lqs PSZD-alanine aminotransferase 2.6.1.21 0.874
3daa PDDD-alanine aminotransferase 2.6.1.21 0.850
4cmf PXGUncharacterized protein / 0.836
4uug PXGBranched-chain amino acid aminotransferase, putative / 0.836
2ej2 PPEBranched-chain amino acid aminotransferase (IlvE) / 0.761
1daa PLPD-alanine aminotransferase 2.6.1.21 0.744
1kt8 ILPBranched-chain-amino-acid aminotransferase, mitochondrial 2.6.1.42 0.677
2abj PLPBranched-chain-amino-acid aminotransferase, cytosolic 2.6.1.42 0.662