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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
2d3a ADP Glutamine synthetase root isozyme 3 6.3.1.2

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
2d3a ADPGlutamine synthetase root isozyme 3 6.3.1.2 0.985
2qc8 ADPGlutamine synthetase 6.3.1.2 0.826
4h2i A125'-nucleotidase 3.1.3.5 0.670
1drt PCVClavaminate synthase 1 1.14.11.21 0.664
3h0l ADPAspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase subunit B 6.3.5 0.657
3fbc TYDNucleoside diphosphate kinase 2.7.4.6 0.651