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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
2d1t SLU Luciferin 4-monooxygenase 1.13.12.7

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
2d1t SLULuciferin 4-monooxygenase 1.13.12.7 1.168
2d1s SLULuciferin 4-monooxygenase 1.13.12.7 1.037
4g37 SLULuciferin 4-monooxygenase 1.13.12.7 0.916
4g36 SLULuciferin 4-monooxygenase 1.13.12.7 0.876
1v25 ANPLong-chain-fatty-acid--CoA ligase 6.2.1.3 0.794
3ies M24Luciferin 4-monooxygenase 1.13.12.7 0.781
5ifi PRXAcetyl-coenzyme A synthetase / 0.744
4oxi GAPEnterobactin synthetase component F-related protein / 0.719
3fce ATPD-alanine--poly(phosphoribitol) ligase subunit 1 / 0.699
1pg3 PRXAcetyl-coenzyme A synthetase / 0.698
2p2b PRXAcetyl-coenzyme A synthetase / 0.697
4r1l ADPPhenylacetate-coenzyme A ligase / 0.696
4bgb ADPPredicted molecular chaperone distantly related to HSP70-fold metalloproteases / 0.679
2p2j PRXAcetyl-coenzyme A synthetase / 0.678
3lnv 1ZZSaframycin Mx1 synthetase B / 0.675
4fu0 ADPD-alanine--D-alanine ligase / 0.675
2p0a ANPSynapsin-3 / 0.674
4c5c ATPD-alanine--D-alanine ligase B 6.3.2.4 0.672
2ydo ADNAdenosine receptor A2a / 0.670
3lgx ATPD-alanine--poly(phosphoribitol) ligase subunit 1 / 0.669
2npn SAMPutative cobalamin synthesis related protein / 0.654