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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
2d1s SLU Luciferin 4-monooxygenase 1.13.12.7

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
2d1s SLULuciferin 4-monooxygenase 1.13.12.7 1.149
2d1t SLULuciferin 4-monooxygenase 1.13.12.7 1.037
4g36 SLULuciferin 4-monooxygenase 1.13.12.7 0.860
4g37 SLULuciferin 4-monooxygenase 1.13.12.7 0.849
1v25 ANPLong-chain-fatty-acid--CoA ligase 6.2.1.3 0.791
3ies M24Luciferin 4-monooxygenase 1.13.12.7 0.758
5ifi PRXAcetyl-coenzyme A synthetase / 0.718
4r1l ADPPhenylacetate-coenzyme A ligase / 0.708
4rvo ADPPhenylacetate-coenzyme A ligase / 0.695
4ehu ANP2-hydroxyisocaproyl-CoA dehydratase activator / 0.688
4oxi GAPEnterobactin synthetase component F-related protein / 0.682
3fce ATPD-alanine--poly(phosphoribitol) ligase subunit 1 / 0.679
1pg3 PRXAcetyl-coenzyme A synthetase / 0.678
2p2j PRXAcetyl-coenzyme A synthetase / 0.674
4mam A12N5-carboxyaminoimidazole ribonucleotide synthase / 0.671
2p0a ANPSynapsin-3 / 0.670
4c5c ATPD-alanine--D-alanine ligase B 6.3.2.4 0.667
4fu0 ADPD-alanine--D-alanine ligase / 0.666
3lgx ATPD-alanine--poly(phosphoribitol) ligase subunit 1 / 0.665
2p2m PRXAcetyl-coenzyme A synthetase / 0.660
5c1p ADPD-alanine--D-alanine ligase / 0.656
2zdg ADPD-alanine--D-alanine ligase / 0.653
3oii SAHRibosomal RNA small subunit methyltransferase NEP1 / 0.652
1cgp CMPcAMP-activated global transcriptional regulator CRP / 0.650