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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
2d1o FA4 Stromelysin-1 3.4.24.17

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
2d1o FA4Stromelysin-1 3.4.24.17 1.167
2d1n FA4Collagenase 3 3.4.24 0.771
4ja1 NGHStromelysin-1 3.4.24.17 0.761
2ow1 7MRMatrix metalloproteinase-9 3.4.24.35 0.739
3o2x 3O2Collagenase 3 3.4.24 0.729
1d8m BBHStromelysin-1 3.4.24.17 0.721
4h49 L29Macrophage metalloelastase 3.4.24.65 0.718
1g49 111Stromelysin-1 3.4.24.17 0.706
1bzs BSINeutrophil collagenase 3.4.24.34 0.689
1d7x SPCStromelysin-1 3.4.24.17 0.681
1d8f SPIStromelysin-1 3.4.24.17 0.673
2woa 576Macrophage metalloelastase 3.4.24.65 0.673
4guy KLJMacrophage metalloelastase 3.4.24.65 0.666
3oho Z79Stromelysin-1 3.4.24.17 0.665
4h76 10BMacrophage metalloelastase 3.4.24.65 0.664
3kry 3KRCollagenase 3 3.4.24 0.656
1zvx FINNeutrophil collagenase 3.4.24.34 0.655
1hy7 MBSStromelysin-1 3.4.24.17 0.653