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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
2d0o ADP Diol dehydratase-reactivating factor alpha subunit

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
2d0o ADPDiol dehydratase-reactivating factor alpha subunit / 1.139
4b9q ATPChaperone protein DnaK / 0.781
1t44 ATPActin, alpha skeletal muscle / 0.757
1ijj ATPActin, alpha skeletal muscle / 0.741
1nlv ATPMajor actin / 0.740
1wua ATPActin, alpha skeletal muscle / 0.740
1qz5 ATPActin, alpha skeletal muscle / 0.739
1kxp ATPActin, alpha skeletal muscle / 0.736
2v51 ATPActin, alpha skeletal muscle / 0.735
3m6g ATPActin, alpha skeletal muscle / 0.726
4k41 ATPActin, alpha skeletal muscle / 0.725
3wt0 ATPCell division protein FtsA / 0.724
4pkg ATPActin, alpha skeletal muscle / 0.724
4b1v ATPActin, alpha skeletal muscle / 0.723
4pl8 ATPActin, alpha skeletal muscle / 0.718
1s22 ATPActin, alpha skeletal muscle / 0.708
3daw ATPActin, alpha skeletal muscle / 0.708
1eqy ATPActin, alpha skeletal muscle / 0.706
2q36 ATPActin, alpha skeletal muscle / 0.686
3d2e ATPHeat shock protein homolog SSE1 / 0.682
2p9k ATPActin-related protein 2 / 0.681
2e2q ADPATP-dependent hexokinase / 0.679
2q97 ATPActin, alpha skeletal muscle / 0.679
3ule ATPActin-related protein 2 / 0.676
1nm1 ATPMajor actin / 0.674
4ehu ANP2-hydroxyisocaproyl-CoA dehydratase activator / 0.662
4jhd ANPActin-5C / 0.659
1ngc ADPHeat shock cognate 71 kDa protein / 0.658
3tu5 ATPActin, alpha skeletal muscle / 0.658
4k42 ADPActin, alpha skeletal muscle / 0.658
3el2 ATPActin-5C / 0.657
2qwl ADPHeat shock cognate 71 kDa protein / 0.654
1u7h NADPutative ornithine cyclodeaminase / 0.653
1jq5 NADGlycerol dehydrogenase 1.1.1.6 0.652
3bxo UPPdTDP-3-amino-3,4,6-trideoxy-alpha-D-glucopyranose / 0.652
4ci6 ATPActin / 0.652
3hsc ADPHeat shock cognate 71 kDa protein / 0.650