sc-PDB
An Annotated Database of Druggable Binding Sites from the Protein DataBank
An Annotated Database of Druggable Binding Sites from the Protein DataBank
Binding Modes are compared using Grim.
For more information, please see the following publication:
Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65
| PDB ID | HET | Uniprot Name | EC Number |
|---|---|---|---|
| 2cvw | TTP | Ribonucleoside-diphosphate reductase large chain 1 | 1.17.4.1 |
| PDB ID | HET | Uniprot Name | EC Number | Binding Mode Similarity |
Align |
|---|---|---|---|---|---|
| 2cvw | TTP | Ribonucleoside-diphosphate reductase large chain 1 | 1.17.4.1 | 1.022 | |
| 2cvy | TTP | Ribonucleoside-diphosphate reductase large chain 1 | 1.17.4.1 | 0.770 | |
| 3rsr | N5P | Ribonucleoside-diphosphate reductase large chain 1 | 1.17.4.1 | 0.734 | |
| 3k8t | DGT | Ribonucleoside-diphosphate reductase large chain 1 | 1.17.4.1 | 0.703 | |
| 2cvu | ANP | Ribonucleoside-diphosphate reductase large chain 1 | 1.17.4.1 | 0.699 | |
| 3o0q | TTP | Vitamin B12-dependent ribonucleotide reductase | / | 0.687 | |
| 3o0o | TTP | Vitamin B12-dependent ribonucleotide reductase | / | 0.683 | |
| 3tb9 | ANP | Ribonucleoside-diphosphate reductase large chain 1 | 1.17.4.1 | 0.682 | |
| 3s8a | DGT | Ribonucleoside-diphosphate reductase large chain 1 | 1.17.4.1 | 0.681 | |
| 2eud | ANP | Ribonucleoside-diphosphate reductase large chain 1 | 1.17.4.1 | 0.679 | |
| 1xjk | DGT | Vitamin B12-dependent ribonucleotide reductase | / | 0.678 | |
| 2cvv | ANP | Ribonucleoside-diphosphate reductase large chain 1 | 1.17.4.1 | 0.674 | |
| 2cvx | DGT | Ribonucleoside-diphosphate reductase large chain 1 | 1.17.4.1 | 0.674 | |
| 3s87 | DGT | Ribonucleoside-diphosphate reductase large chain 1 | 1.17.4.1 | 0.672 | |
| 1xjg | DTP | Vitamin B12-dependent ribonucleotide reductase | / | 0.671 | |
| 1xje | TTP | Vitamin B12-dependent ribonucleotide reductase | / | 0.668 | |
| 2vp0 | TTP | Deoxynucleoside kinase | / | 0.663 | |
| 1peq | TTP | Ribonucleoside-diphosphate reductase 2 subunit alpha | 1.17.4.1 | 0.651 |