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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
2cvu ANP Ribonucleoside-diphosphate reductase large chain 1 1.17.4.1

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
2cvu ANPRibonucleoside-diphosphate reductase large chain 1 1.17.4.1 1.014
2cvv ANPRibonucleoside-diphosphate reductase large chain 1 1.17.4.1 0.909
3tb9 ANPRibonucleoside-diphosphate reductase large chain 1 1.17.4.1 0.867
2cvx DGTRibonucleoside-diphosphate reductase large chain 1 1.17.4.1 0.854
2wgh DTPRibonucleoside-diphosphate reductase large subunit 1.17.4.1 0.842
3s8a DGTRibonucleoside-diphosphate reductase large chain 1 1.17.4.1 0.826
3k8t DGTRibonucleoside-diphosphate reductase large chain 1 1.17.4.1 0.819
1xjj DGTVitamin B12-dependent ribonucleotide reductase / 0.809
3s87 DGTRibonucleoside-diphosphate reductase large chain 1 1.17.4.1 0.802
2eud ANPRibonucleoside-diphosphate reductase large chain 1 1.17.4.1 0.801
1xjk DGTVitamin B12-dependent ribonucleotide reductase / 0.794
3o0o TTPVitamin B12-dependent ribonucleotide reductase / 0.790
2cvy TTPRibonucleoside-diphosphate reductase large chain 1 1.17.4.1 0.783
1xjg DTPVitamin B12-dependent ribonucleotide reductase / 0.772
1xje TTPVitamin B12-dependent ribonucleotide reductase / 0.770
3s8c ANPRibonucleoside-diphosphate reductase large chain 1 1.17.4.1 0.758
1peq TTPRibonucleoside-diphosphate reductase 2 subunit alpha 1.17.4.1 0.749
2cvw TTPRibonucleoside-diphosphate reductase large chain 1 1.17.4.1 0.699
3o0n TTPVitamin B12-dependent ribonucleotide reductase / 0.699
3o0q TTPVitamin B12-dependent ribonucleotide reductase / 0.694
4bri UNPEctonucleoside triphosphate diphosphohydrolase I / 0.691
5c03 AGSNon-receptor tyrosine-protein kinase TYK2 2.7.10.2 0.691
5im3 DTPRibonucleoside-diphosphate reductase / 0.691
3rsr N5PRibonucleoside-diphosphate reductase large chain 1 1.17.4.1 0.687
4brd ANPEctonucleoside triphosphate diphosphohydrolase I / 0.684
4brg GNPEctonucleoside triphosphate diphosphohydrolase I / 0.680
3zcb ATPAdenosine monophosphate-protein transferase VbhT 2.7.7.n1 0.678
3mvw BHZNickel-binding periplasmic protein / 0.676
3oab DSTGeranyl diphosphate synthase large subunit / 0.673
1u5a BIKL-lactate dehydrogenase 1.1.1.27 0.672
3mw0 BHRNickel-binding periplasmic protein / 0.672
2r1r TTPRibonucleoside-diphosphate reductase 1 subunit alpha 1.17.4.1 0.660
2zev B71Geranylgeranyl pyrophosphate synthase / 0.660
1toj HCIAspartate aminotransferase 2.6.1.1 0.655
1peo DCPRibonucleoside-diphosphate reductase 2 subunit alpha 1.17.4.1 0.654
2qtc TDKPyruvate dehydrogenase E1 component 1.2.4.1 0.653
3ez3 ZOLFarnesyl pyrophosphate synthase, putative / 0.653
1rqj RISFarnesyl diphosphate synthase 2.5.1.10 0.652
3n0z 3ATAdenylate cyclase 2 / 0.651
3cgb COACoenzyme A disulfide reductase / 0.650
4kyh ZSTLactoylglutathione lyase 4.4.1.5 0.650