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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
2cvq NDP Malate dehydrogenase

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
2cvq NDPMalate dehydrogenase / 0.890
1y7t NDPMalate dehydrogenase / 0.802
1bdm NAXMalate dehydrogenase / 0.669
2aa3 AP0L-lactate dehydrogenase / 0.663
2a94 AP0L-lactate dehydrogenase 1.1.1.27 0.660
1b8v NADMalate dehydrogenase / 0.658
2dfd NADMalate dehydrogenase, mitochondrial 1.1.1.37 0.656
4wlu NADMalate dehydrogenase, mitochondrial 1.1.1.37 0.651
5a1t NAIL-lactate dehydrogenase / 0.650