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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
2cts COA Citrate synthase, mitochondrial 2.3.3.1

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
2cts COACitrate synthase, mitochondrial 2.3.3.1 1.153
1csc CMCCitrate synthase, mitochondrial 2.3.3.1 0.834
3csc ACOCitrate synthase, mitochondrial 2.3.3.1 0.794
5cts CMCCitrate synthase, mitochondrial 2.3.3.1 0.760
6cts CICCitrate synthase, mitochondrial 2.3.3.1 0.663
2r26 CMCCitrate synthase 2.3.3.16 0.661