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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
2cnd FAD Nitrate reductase [NADH] 1.7.1.1

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
2cnd FADNitrate reductase [NADH] 1.7.1.1 1.213
1cnf FADNitrate reductase [NADH] 1.7.1.1 0.833
3w5h FADNADH-cytochrome b5 reductase 3 1.6.2.2 0.820
1cqx FADFlavohemoprotein / 0.815
1umk FADNADH-cytochrome b5 reductase 3 1.6.2.2 0.811
1ib0 FADNADH-cytochrome b5 reductase 3 1.6.2.2 0.802
2b5o FADFerredoxin--NADP reductase 1.18.1.2 0.795
3crz FADFerredoxin--NADP+ reductase / 0.794
2qdx FADFerredoxin--NADP+ reductase / 0.793
4yaf FADNADPH--cytochrome P450 reductase / 0.793
1fdr FADFerredoxin--NADP reductase 1.18.1.2 0.785
3fpk FADFerredoxin-NADP reductase / 0.781
4wqm FADToluene-4-monooxygenase electron transfer component 1.18.1.3 0.779
1qg0 FADFerredoxin--NADP reductase, leaf isozyme, chloroplastic 1.18.1.2 0.776
4c43 FADFerredoxin--NADP reductase 1.18.1.2 0.775
3zc3 FADFerredoxin--NADP reductase 1.18.1.2 0.773
4uaj FADNa(+)-translocating NADH-quinone reductase subunit F / 0.773
1amo FADNADPH--cytochrome P450 reductase / 0.766
1w34 FADFerredoxin--NADP reductase 1.18.1.2 0.766
3w2f FADNADH-cytochrome b5 reductase 3 1.6.2.2 0.766
4k1x FADNADPH:ferredoxin reductase / 0.766
2vyq FADFerredoxin--NADP reductase 1.18.1.2 0.765
1fnc FDAFerredoxin--NADP reductase, chloroplastic 1.18.1.2 0.762
1i7p FADNADH-cytochrome b5 reductase 3 1.6.2.2 0.762
2rc6 FADFerredoxin--NADP reductase / 0.761
2vnk FADNADPH:ferredoxin reductase / 0.761
2bgj FADNADPH:ferredoxin reductase / 0.760
3qfc FADNADPH--cytochrome P450 reductase / 0.759
2r6h FADNa(+)-translocating NADH-quinone reductase subunit F / 0.758
1gaw FADFerredoxin / 0.757
1qgz FADFerredoxin--NADP reductase 1.18.1.2 0.756
1j9z FADNADPH--cytochrome P450 reductase / 0.755
1krh FADBenzoate 1,2-dioxygenase electron transfer component 1.18.1.3 0.754
1bx1 FADFerredoxin--NADP reductase, chloroplastic 1.18.1.2 0.753
3zbt FADFerredoxin--NADP reductase 1.18.1.2 0.750
1bx0 FADFerredoxin--NADP reductase, chloroplastic 1.18.1.2 0.749
1ja0 FADNADPH--cytochrome P450 reductase / 0.749
1gaq FADFerredoxin / 0.745
2ok8 FADFerredoxin--NADP reductase, apicoplast / 0.744
1b2r FADFerredoxin--NADP reductase 1.18.1.2 0.743
4b4d FADFerredoxin-NADP reductase / 0.742
2vnh FADNADPH:ferredoxin reductase / 0.740
3vo2 FADFerredoxin--NADP reductase / 0.740
1ogi FADFerredoxin--NADP reductase 1.18.1.2 0.738
1qgy FADFerredoxin--NADP reductase 1.18.1.2 0.735
4y9u FADNADPH--cytochrome P450 reductase / 0.735
3qe2 FADNADPH--cytochrome P450 reductase / 0.733
1sm4 FADFerredoxin--NADP reductase / 0.732
1e64 FADFerredoxin--NADP reductase 1.18.1.2 0.731
4yao FADNADPH--cytochrome P450 reductase / 0.731
1bjk FADFerredoxin--NADP reductase 1.18.1.2 0.730
3w2e FADNADH-cytochrome b5 reductase 3 1.6.2.2 0.730
1qh0 FADFerredoxin--NADP reductase 1.18.1.2 0.729
1ja1 FADNADPH--cytochrome P450 reductase / 0.727
1f20 FADNitric oxide synthase, brain 1.14.13.39 0.725
1gjr FADFerredoxin--NADP reductase 1.18.1.2 0.725
1gr1 FADFerredoxin--NADP reductase 1.18.1.2 0.725
1ogj FADFerredoxin--NADP reductase 1.18.1.2 0.724
1e63 FADFerredoxin--NADP reductase 1.18.1.2 0.720
1que FADFerredoxin--NADP reductase 1.18.1.2 0.720
3qfr FADNADPH--cytochrome P450 reductase / 0.720
3ojw FADNADPH--cytochrome P450 reductase / 0.717
3qfs FADNADPH--cytochrome P450 reductase / 0.716
1h42 FADFerredoxin--NADP reductase 1.18.1.2 0.715
2rc5 FADFerredoxin--NADP reductase / 0.715
1fnb FADFerredoxin--NADP reductase, chloroplastic 1.18.1.2 0.713
4y7c FADNADPH--cytochrome P450 reductase / 0.713
4y9r FADNADPH--cytochrome P450 reductase / 0.711
1ewy FADFerredoxin--NADP reductase 1.18.1.2 0.710
2ok7 FADFerredoxin--NADP reductase, apicoplast / 0.709
1fnd FADFerredoxin--NADP reductase, chloroplastic 1.18.1.2 0.708
4yau FADNADPH--cytochrome P450 reductase / 0.708
1h85 FADFerredoxin--NADP reductase 1.18.1.2 0.707
2xnc FADFerredoxin--NADP reductase, leaf isozyme, chloroplastic 1.18.1.2 0.704
1w35 FADFerredoxin--NADP reductase 1.18.1.2 0.701
2pia FMNPhthalate dioxygenase reductase / 0.701
1e62 FADFerredoxin--NADP reductase 1.18.1.2 0.697
1gvh FADFlavohemoprotein / 0.695
3jqr FADFerredoxin--NADP reductase, apicoplast / 0.694
4bpr FADFerredoxin--NADP reductase 1.18.1.2 0.694
1go2 FADFerredoxin--NADP reductase 1.18.1.2 0.689
2bn4 FADNADPH--cytochrome P450 reductase / 0.674
1ndh FADNADH-cytochrome b5 reductase 3 1.6.2.2 0.672
2bf4 FADNADPH--cytochrome P450 reductase / 0.671
3ojx FADNADPH--cytochrome P450 reductase / 0.671
2bgi FADNADPH:ferredoxin reductase / 0.670
1rz1 FADPhenol 2-hydroxylase component B / 0.669
1w87 FADFerredoxin--NADP reductase 1.18.1.2 0.669
4af7 FADFerredoxin--NADP reductase, leaf isozyme, chloroplastic 1.18.1.2 0.669
1eje FMNProtein MTH_152 / 0.661
1tll FADNitric oxide synthase, brain 1.14.13.39 0.659
4l82 FMNUncharacterized protein / 0.659
2bpo FADNADPH--cytochrome P450 reductase / 0.658
5cho FADFlavin reductase / 0.656
1ep3 FADDihydroorotate dehydrogenase B (NAD(+)), electron transfer subunit / 0.655