Logo scPDB

sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

Logo CNRS Logo Unistra
Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
2cmk CDP Cytidylate kinase 2.7.4.25

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
2cmk CDPCytidylate kinase 2.7.4.25 1.084
3elb C5PEthanolamine-phosphate cytidylyltransferase 2.7.7.14 0.752
4xsv C5PEthanolamine-phosphate cytidylyltransferase 2.7.7.14 0.688
3akd CDPCytidylate kinase / 0.681
1i2c UPGUDP-sulfoquinovose synthase, chloroplastic 3.13.1.1 0.668
1i3l GDUUDP-glucose 4-epimerase / 0.659
4die C5PCytidylate kinase / 0.655