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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
2clo PLS Tryptophan synthase beta chain 4.2.1.20

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
2clo PLSTryptophan synthase beta chain 4.2.1.20 1.128
1kfj PLSTryptophan synthase beta chain 4.2.1.20 1.075
5dw0 PLSTryptophan synthase beta chain 1 4.2.1.20 0.988
2tys PLTTryptophan synthase beta chain 4.2.1.20 0.845
2trs PLSTryptophan synthase beta chain 4.2.1.20 0.838
4qys PLRTryptophan synthase beta chain 2 4.2.1.20 0.711
4d9e LCSD-cysteine desulfhydrase / 0.676
1men GARTrifunctional purine biosynthetic protein adenosine-3 2.1.2.2 0.657