Logo scPDB

sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

Logo CNRS Logo Unistra
Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
2clh F19 Tryptophan synthase alpha chain

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
2clh F19Tryptophan synthase alpha chain / 0.965
4xug F9FTryptophan synthase alpha chain / 0.762
1a50 FIPTryptophan synthase alpha chain / 0.708
1fuy FIPTryptophan synthase alpha chain / 0.704
1a5s FIPTryptophan synthase alpha chain / 0.678
1beu IPLTryptophan synthase alpha chain / 0.669
1kfc IPLTryptophan synthase alpha chain / 0.667