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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
2cct 2E1 Heat shock protein HSP 90-alpha

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
2cct 2E1Heat shock protein HSP 90-alpha / 0.915
2bsm BSMHeat shock protein HSP 90-alpha / 0.847
2uwd 2GGHeat shock protein HSP 90-alpha / 0.823
2vcj 2EQHeat shock protein HSP 90-alpha / 0.791
2vci 2GJHeat shock protein HSP 90-alpha / 0.783
1yc3 4BCHeat shock protein HSP 90-alpha / 0.775
2yi5 YI5Heat shock protein HSP 90-alpha / 0.768
2ye9 2D4Heat shock protein HSP 90-alpha / 0.764
4b7p 9UNHeat shock protein HSP 90-alpha / 0.755
3k97 4CDHeat shock protein HSP 90-alpha / 0.745
2yi7 BZ8Heat shock protein HSP 90-alpha / 0.735
2ccu 2D9Heat shock protein HSP 90-alpha / 0.733
3hhu 819Heat shock protein HSP 90-alpha / 0.729
3k98 1RCHeat shock protein HSP 90-alpha / 0.717
2yjw YJWHeat shock protein HSP 90-alpha / 0.711
2yk2 YJWHeat shock protein HSP 90-alpha / 0.708
1yc4 43PHeat shock protein HSP 90-alpha / 0.696
2bre KJ2ATP-dependent molecular chaperone HSP82 / 0.688
2brc CT5ATP-dependent molecular chaperone HSP82 / 0.686
1qy8 RDIEndoplasmin / 0.657
3qqh X0ACyclin-dependent kinase 2 2.7.11.22 0.654
1yc1 4BCHeat shock protein HSP 90-alpha / 0.651
3hek BD0Heat shock protein HSP 90-alpha / 0.650