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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
2cch ATP Cyclin-dependent kinase 2 2.7.11.22

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
2cch ATPCyclin-dependent kinase 2 2.7.11.22 0.968
4ii5 ADPCyclin-dependent kinase 2 2.7.11.22 0.680
4eom ATPCyclin-dependent kinase 2 2.7.11.22 0.676
3b2t M33Fibroblast growth factor receptor 2 / 0.668
3ung ADPCRISPR system Cmr subunit Cmr2 / 0.664
4eoo ATPCyclin-dependent kinase 2 2.7.11.22 0.661
5csh ATPCasein kinase II subunit alpha 2.7.11.1 0.657
3uim ANPBRASSINOSTEROID INSENSITIVE 1-associated receptor kinase 1 2.7.10.1 0.654
4h3q ANPMitogen-activated protein kinase 1 2.7.11.24 0.654
4i3z ADPCyclin-dependent kinase 2 2.7.11.22 0.653
4xlv ACPInsulin receptor 2.7.10.1 0.652