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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
2cbs R13 Cellular retinoic acid-binding protein 2

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
2cbs R13Cellular retinoic acid-binding protein 2 / 1.069
1cbs REACellular retinoic acid-binding protein 2 / 0.898
2fr3 REACellular retinoic acid-binding protein 2 / 0.895
3cbs R12Cellular retinoic acid-binding protein 2 / 0.774
2g78 REACellular retinoic acid-binding protein 2 / 0.768
3cwk REACellular retinoic acid-binding protein 2 / 0.768
1cbr REACellular retinoic acid-binding protein 1 / 0.717
4k6i 9RARetinoic acid receptor RXR-alpha / 0.657