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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
2cbj OAN O-GlcNAcase NagJ

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
2cbj OANO-GlcNAcase NagJ / 1.172
2wb5 VGBO-GlcNAcase NagJ / 0.900
2xpk Z0MO-GlcNAcase NagJ / 0.868
2j62 GSZO-GlcNAcase NagJ / 0.798
2wca NP6O-GlcNAcase BT_4395 / 0.720
4azh LOGBeta-N-acetylhexosaminidase 3.2.1.52 0.685
2c9b PUG6,7-dimethyl-8-ribityllumazine synthase 2.5.1.78 0.653