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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
2cah NDP Catalase 1.11.1.6

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
2cah NDPCatalase 1.11.1.6 1.130
4e37 NDPCatalase 1.11.1.6 0.894
1dgb NDPCatalase 1.11.1.6 0.817
1dgh NDPCatalase 1.11.1.6 0.764
1dgg NDPCatalase 1.11.1.6 0.745
1dgf NDPCatalase 1.11.1.6 0.735
3nwl NDPCatalase 1.11.1.6 0.730
7cat NDPCatalase 1.11.1.6 0.714
8cat NDPCatalase 1.11.1.6 0.714
4xcv NDPProbable hydroxyacid dehydrogenase protein / 0.655