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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
2c6l DT4 Cyclin-dependent kinase 2 2.7.11.22

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
2c6l DT4Cyclin-dependent kinase 2 2.7.11.22 0.940
1y8y CT7Cyclin-dependent kinase 2 2.7.11.22 0.794
2c6k DT2Cyclin-dependent kinase 2 2.7.11.22 0.754
2c6i DT1Cyclin-dependent kinase 2 2.7.11.22 0.741
3r9d X6BCyclin-dependent kinase 2 2.7.11.22 0.707
2vtl LZ5Cyclin-dependent kinase 2 2.7.11.22 0.705
2c6m DT5Cyclin-dependent kinase 2 2.7.11.22 0.696
2vto LZ8Cyclin-dependent kinase 2 2.7.11.22 0.691
3qtz X42Cyclin-dependent kinase 2 2.7.11.22 0.690
4acm 7YGCyclin-dependent kinase 2 2.7.11.22 0.677
2vti LZ3Cyclin-dependent kinase 2 2.7.11.22 0.676
3qu0 X40Cyclin-dependent kinase 2 2.7.11.22 0.675
3wbl PDYCyclin-dependent kinase 2 2.7.11.22 0.675
1y91 CT9Cyclin-dependent kinase 2 2.7.11.22 0.672
2vtp LZ9Cyclin-dependent kinase 2 2.7.11.22 0.671
4fks 46KCyclin-dependent kinase 2 2.7.11.22 0.666
2w06 FRVCyclin-dependent kinase 2 2.7.11.22 0.665
2vtn LZ7Cyclin-dependent kinase 2 2.7.11.22 0.662
3rmf 20ZCyclin-dependent kinase 2 2.7.11.22 0.655
1ke5 LS1Cyclin-dependent kinase 2 2.7.11.22 0.653