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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
2byh 2D7 Heat shock protein HSP 90-alpha

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
2byh 2D7Heat shock protein HSP 90-alpha / 1.029
2byi 2DDHeat shock protein HSP 90-alpha / 0.780
3hek BD0Heat shock protein HSP 90-alpha / 0.721
3k97 4CDHeat shock protein HSP 90-alpha / 0.713
2ye4 2FYHeat shock protein HSP 90-alpha / 0.692
3ekr PY9Heat shock protein HSP 90-alpha / 0.692
2xab VHDHeat shock protein HSP 90-alpha / 0.686
2yi6 6QMHeat shock protein HSP 90-alpha / 0.686
1yc3 4BCHeat shock protein HSP 90-alpha / 0.680
1yc1 4BCHeat shock protein HSP 90-alpha / 0.676
2yi5 YI5Heat shock protein HSP 90-alpha / 0.674
2yi7 BZ8Heat shock protein HSP 90-alpha / 0.663