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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
2bxt C2D Prothrombin 3.4.21.5

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
2bxt C2DProthrombin 3.4.21.5 1.082
1mue CDDProthrombin 3.4.21.5 0.819
1z71 L17Prothrombin 3.4.21.5 0.815
1nm6 L86Prothrombin 3.4.21.5 0.814
1sl3 170Prothrombin 3.4.21.5 0.800
1mu8 CDBProthrombin 3.4.21.5 0.781
1mu6 CDAProthrombin 3.4.21.5 0.762
3c1k T15Prothrombin 3.4.21.5 0.762
1nt1 T76Prothrombin 3.4.21.5 0.751
1g7u PEP2-dehydro-3-deoxyphosphooctonate aldolase 2.5.1.55 0.744
2zdv 37UProthrombin 3.4.21.5 0.685
3qwc 98PProthrombin 3.4.21.5 0.684
3dhk 23UProthrombin 3.4.21.5 0.680
2zfp 19UProthrombin 3.4.21.5 0.674
3dux 64UProthrombin 3.4.21.5 0.672
1d9i 00PProthrombin 3.4.21.5 0.671
2zhq 27UProthrombin 3.4.21.5 0.666
2r2m I50Prothrombin 3.4.21.5 0.664
2zff 53UProthrombin 3.4.21.5 0.662
2znk 31UProthrombin 3.4.21.5 0.661
4bao MVFProthrombin 3.4.21.5 0.661
4e5f 0N7Polymerase acidic protein / 0.660
1ta2 176Prothrombin 3.4.21.5 0.658
2zc9 22UProthrombin 3.4.21.5 0.656
1jwt BLIProthrombin 3.4.21.5 0.655
2zf0 51UProthrombin 3.4.21.5 0.655
3f68 91UProthrombin 3.4.21.5 0.654
2bdy UNBProthrombin 3.4.21.5 0.653