sc-PDB
An Annotated Database of Druggable Binding Sites from the Protein DataBank
An Annotated Database of Druggable Binding Sites from the Protein DataBank
Binding Modes are compared using Grim.
For more information, please see the following publication:
Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65
| PDB ID | HET | Uniprot Name | EC Number |
|---|---|---|---|
| 2bue | COA | AAC(6')-Ib |
| PDB ID | HET | Uniprot Name | EC Number | Binding Mode Similarity |
Align |
|---|---|---|---|---|---|
| 2bue | COA | AAC(6')-Ib | / | 1.345 | |
| 2qir | COA | Aminoglycoside 6-N-acetyltransferase type Ib11 | / | 1.283 | |
| 2prb | COA | Aminoglycoside 6-N-acetyltransferase type Ib11 | / | 1.273 | |
| 2vqy | ACO | AAC(6')-Ib | / | 1.270 | |
| 1v0c | ACO | AAC(6')-Ib | / | 1.258 | |
| 2ge3 | ACO | Probable acetyltransferase | / | 0.890 | |
| 2vzz | SCA | Putative succinyl-CoA transferase Rv0802c | 2.8.3 | 0.791 | |
| 2vxk | COA | Glucosamine 6-phosphate acetyltransferase, putative | / | 0.769 | |
| 2bei | ACO | Diamine acetyltransferase 2 | 2.3.1.57 | 0.758 | |
| 2vez | ACO | Glucosamine 6-phosphate acetyltransferase, putative | / | 0.755 | |
| 1cjw | COT | Serotonin N-acetyltransferase | / | 0.754 | |
| 1kuv | CA5 | Serotonin N-acetyltransferase | / | 0.747 | |
| 2cy2 | ACO | Probable acetyltransferase | / | 0.742 | |
| 1ib1 | COT | Serotonin N-acetyltransferase | / | 0.739 | |
| 1yre | COA | Uncharacterized protein | / | 0.739 | |
| 2q4v | ACO | Diamine acetyltransferase 2 | 2.3.1.57 | 0.733 | |
| 1i12 | ACO | Glucosamine 6-phosphate N-acetyltransferase | / | 0.729 | |
| 1bob | ACO | Histone acetyltransferase type B catalytic subunit | / | 0.728 | |
| 2fxf | ACO | Diamine acetyltransferase 1 | / | 0.723 | |
| 3zj0 | ACO | Putative acetyltransferase OgpAT | / | 0.718 | |
| 2b3v | ACO | Diamine acetyltransferase 1 | / | 0.713 | |
| 2cns | ACO | Ribosomal-protein-alanine acetyltransferase | / | 0.713 | |
| 1tiq | COA | Spermidine/spermine N(1)-acetyltransferase | / | 0.708 | |
| 4ag7 | COA | Glucosamine 6-phosphate N-acetyltransferase | / | 0.708 | |
| 1kuy | COT | Serotonin N-acetyltransferase | / | 0.707 | |
| 4ava | ACO | Acetyltransferase Pat | 2.3.1 | 0.706 | |
| 2a4n | COA | Aac(6')-Ii protein | / | 0.697 | |
| 1pu9 | COA | HAT A1 | / | 0.696 | |
| 1j4j | ACO | Acetyltransferase | 2.3.1 | 0.688 | |
| 4u9v | ACO | N-alpha-acetyltransferase 40 | 2.3.1 | 0.687 | |
| 1cm0 | COA | Histone acetyltransferase KAT2B | 2.3.1.48 | 0.686 | |
| 3gy9 | COA | GCN5-related N-acetyltransferase | / | 0.684 | |
| 3gya | COA | GCN5-related N-acetyltransferase | / | 0.684 | |
| 4r87 | COA | Spermidine N(1)-acetyltransferase | / | 0.682 | |
| 3exn | ACO | Probable acetyltransferase | / | 0.681 | |
| 4jwp | ACO | GCN5-related N-acetyltransferase | / | 0.678 | |
| 1l0c | COT | Serotonin N-acetyltransferase | / | 0.674 | |
| 2jdd | ACO | Probable acetyltransferase | / | 0.670 | |
| 4kvx | ACO | N-terminal acetyltransferase A complex catalytic subunit ard1 | 2.3.1.88 | 0.670 | |
| 2zpa | ACO | tRNA(Met) cytidine acetyltransferase TmcA | / | 0.669 | |
| 2jdc | CAO | Probable acetyltransferase | / | 0.666 | |
| 3f8k | COA | Uncharacterized protein | / | 0.666 | |
| 5kf8 | ACO | Predicted acetyltransferase | / | 0.666 | |
| 3fbu | COA | Acetyltransferase, GNAT family | / | 0.665 | |
| 5kf9 | ACO | Predicted acetyltransferase | / | 0.663 | |
| 2rc4 | ACO | Histone acetyltransferase KAT6A | / | 0.661 | |
| 1qsm | ACO | Histone acetyltransferase HPA2 | / | 0.660 | |
| 1s7l | COA | Acetyl transferase | / | 0.659 | |
| 2bsw | CAO | Probable acetyltransferase | / | 0.659 | |
| 4b5o | ACO | Alpha-tubulin N-acetyltransferase 1 | / | 0.657 | |
| 2ft0 | ACO | dTDP-fucosamine acetyltransferase | / | 0.652 | |
| 2ozg | COA | GCN5-related N-acetyltransferase | / | 0.652 | |
| 4ua3 | COA | N-alpha-acetyltransferase 40 | 2.3.1 | 0.652 | |
| 2x7b | COA | N-alpha-acetyltransferase | 2.3.1 | 0.650 | |
| 4lx9 | ACO | N-alpha-acetyltransferase | 2.3.1 | 0.650 |