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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
2bu9 HFV Isopenicillin N synthase 1.21.3.1

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
2bu9 HFVIsopenicillin N synthase 1.21.3.1 1.198
2vbd V10Isopenicillin N synthase 1.21.3.1 0.940
2vbp VB1Isopenicillin N synthase 1.21.3.1 0.918
2wo7 ASVIsopenicillin N synthase 1.21.3.1 0.849
1hb1 OCVIsopenicillin N synthase 1.21.3.1 0.848
1uzw CDHIsopenicillin N synthase 1.21.3.1 0.846
1qiq ACCIsopenicillin N synthase 1.21.3.1 0.840
1w06 W05Isopenicillin N synthase 1.21.3.1 0.835
2ivi ACWIsopenicillin N synthase 1.21.3.1 0.835
1bk0 ACVIsopenicillin N synthase 1.21.3.1 0.834
1blz ACVIsopenicillin N synthase 1.21.3.1 0.833
1obn ASVIsopenicillin N synthase 1.21.3.1 0.831
3zoi M2WIsopenicillin N synthase 1.21.3.1 0.829
2y60 M8FIsopenicillin N synthase 1.21.3.1 0.825
1qjf ACSIsopenicillin N synthase 1.21.3.1 0.784
2bjs ACVIsopenicillin N synthase 1.21.3.1 0.774
2y6f M9FIsopenicillin N synthase 1.21.3.1 0.761
4bb3 KKAIsopenicillin N synthase 1.21.3.1 0.748
1odn APVIsopenicillin N synthase 1.21.3.1 0.738
1hb3 SCVIsopenicillin N synthase 1.21.3.1 0.732
1oc1 ASVIsopenicillin N synthase 1.21.3.1 0.714
2jb4 A14Isopenicillin N synthase 1.21.3.1 0.694
3ntd COAFAD-dependent pyridine nucleotide-disulphide oxidoreductase / 0.664