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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
2bts U32 Cyclin-dependent kinase 2 2.7.11.22

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
2bts U32Cyclin-dependent kinase 2 2.7.11.22 1.021
3rpy 27ZCyclin-dependent kinase 2 2.7.11.22 0.787
3r9h Z67Cyclin-dependent kinase 2 2.7.11.22 0.774
3r9o Z71Cyclin-dependent kinase 2 2.7.11.22 0.774
3qxp X64Cyclin-dependent kinase 2 2.7.11.22 0.745
2btr U73Cyclin-dependent kinase 2 2.7.11.22 0.742
1oit HDTCyclin-dependent kinase 2 2.7.11.22 0.733
3rk7 08ZCyclin-dependent kinase 2 2.7.11.22 0.722
2w06 FRVCyclin-dependent kinase 2 2.7.11.22 0.718
2c6i DT1Cyclin-dependent kinase 2 2.7.11.22 0.716
2wxv WXVCyclin-dependent kinase 2 2.7.11.22 0.714
3dog NNNCyclin-dependent kinase 2 2.7.11.22 0.707
2vti LZ3Cyclin-dependent kinase 2 2.7.11.22 0.694
3o0g 3O0Cyclin-dependent-like kinase 5 2.7.11.1 0.690
2c6t DT5Cyclin-dependent kinase 2 2.7.11.22 0.686
3igg EFQCyclin-dependent kinase 2 2.7.11.22 0.686
4eok 4SPCyclin-dependent kinase 2 2.7.11.22 0.686
1g5s I17Cyclin-dependent kinase 2 2.7.11.22 0.680
2c6o 4SPCyclin-dependent kinase 2 2.7.11.22 0.680
3rzb 02ZCyclin-dependent kinase 2 2.7.11.22 0.678
1v0o INRCell division control protein 2 homolog 2.7.11.22 0.674
3rkb 12ZCyclin-dependent kinase 2 2.7.11.22 0.673
4lyn 1YGCyclin-dependent kinase 2 2.7.11.22 0.673
2wpa 889Cyclin-dependent kinase 2 2.7.11.22 0.669
2iw6 QQ2Cyclin-dependent kinase 2 2.7.11.22 0.668
1vyz N5BCyclin-dependent kinase 2 2.7.11.22 0.667
1vyw 292Cyclin-dependent kinase 2 2.7.11.22 0.666
1y8y CT7Cyclin-dependent kinase 2 2.7.11.22 0.666
3qtw X3ACyclin-dependent kinase 2 2.7.11.22 0.666
4fkj 11KCyclin-dependent kinase 2 2.7.11.22 0.666
2x1n X1NCyclin-dependent kinase 2 2.7.11.22 0.663
3r8z Z63Cyclin-dependent kinase 2 2.7.11.22 0.662
2f2c AP9Cyclin-dependent kinase 6 2.7.11.22 0.660
2fvd LIACyclin-dependent kinase 2 2.7.11.22 0.659
3qtq X35Cyclin-dependent kinase 2 2.7.11.22 0.658
1oi9 N20Cyclin-dependent kinase 2 2.7.11.22 0.656
4fkr 45KCyclin-dependent kinase 2 2.7.11.22 0.655
4fv8 E63Mitogen-activated protein kinase 1 2.7.11.24 0.654
3rk9 09ZCyclin-dependent kinase 2 2.7.11.22 0.653
2iw9 4SPCyclin-dependent kinase 2 2.7.11.22 0.651
2vgp AD6Aurora kinase B-A 2.7.11.1 0.651
2vtj LZ4Cyclin-dependent kinase 2 2.7.11.22 0.650
4fkg 4CKCyclin-dependent kinase 2 2.7.11.22 0.650