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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
2bpo NAP NADPH--cytochrome P450 reductase

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
2bpo NAPNADPH--cytochrome P450 reductase / 1.194
2bf4 NAPNADPH--cytochrome P450 reductase / 0.942
3qfs NAPNADPH--cytochrome P450 reductase / 0.804
3qe2 NAPNADPH--cytochrome P450 reductase / 0.802
3qft NAPNADPH--cytochrome P450 reductase / 0.800
4yal 2AMNADPH--cytochrome P450 reductase / 0.798
2bn4 NAPNADPH--cytochrome P450 reductase / 0.796
1amo NAPNADPH--cytochrome P450 reductase / 0.788
3qfc NAPNADPH--cytochrome P450 reductase / 0.784
3qfr NAPNADPH--cytochrome P450 reductase / 0.777
4yaf 2AMNADPH--cytochrome P450 reductase / 0.770
4y9r NAPNADPH--cytochrome P450 reductase / 0.767
4yaw 2AMNADPH--cytochrome P450 reductase / 0.767
3ojx NAPNADPH--cytochrome P450 reductase / 0.758
1ja0 NAPNADPH--cytochrome P450 reductase / 0.753
4y9u NAPNADPH--cytochrome P450 reductase / 0.752
4y7c NAPNADPH--cytochrome P450 reductase / 0.747
4yau 2AMNADPH--cytochrome P450 reductase / 0.747
1ja1 NAPNADPH--cytochrome P450 reductase / 0.741
1f20 NAPNitric oxide synthase, brain 1.14.13.39 0.736
1tll NAPNitric oxide synthase, brain 1.14.13.39 0.723
1fnd A2PFerredoxin--NADP reductase, chloroplastic 1.18.1.2 0.707
3zc3 NAPFerredoxin--NADP reductase 1.18.1.2 0.691
4yao 2AMNADPH--cytochrome P450 reductase / 0.675