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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
2bok 784 Coagulation factor X 3.4.21.6

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
2bok 784Coagulation factor X 3.4.21.6 0.919
3plp BBACationic trypsin 3.4.21.4 0.805
2cf8 ESHProthrombin 3.4.21.5 0.784
2cf9 348Prothrombin 3.4.21.5 0.784
1vzq SHYProthrombin 3.4.21.5 0.771
1oyt FSNProthrombin 3.4.21.5 0.758
2cn0 F25Prothrombin 3.4.21.5 0.751
1ype UIPProthrombin 3.4.21.5 0.747
1g7u PEP2-dehydro-3-deoxyphosphooctonate aldolase 2.5.1.55 0.744
4e5i 0N9Polymerase acidic protein / 0.744
1ypg UIRProthrombin 3.4.21.5 0.732
1ypj UIBProthrombin 3.4.21.5 0.731
1lpk CBBCoagulation factor X 3.4.21.6 0.721
4bam MM9Prothrombin 3.4.21.5 0.721
4e7r 0NWProthrombin 3.4.21.5 0.721
1ghv 120Prothrombin 3.4.21.5 0.716
3v0x ANHCationic trypsin 3.4.21.4 0.714
4ax9 N5NProthrombin 3.4.21.5 0.710
2v3h I25Prothrombin 3.4.21.5 0.707
4bah MELProthrombin 3.4.21.5 0.704
1owe 675Urokinase-type plasminogen activator 3.4.21.73 0.699
1o5g CR9Prothrombin 3.4.21.5 0.698
1c5n ESIProthrombin 3.4.21.5 0.696
1nzq 162Prothrombin 3.4.21.5 0.694
4bak M67Prothrombin 3.4.21.5 0.692
4az2 9MUProthrombin 3.4.21.5 0.688
1kts C24Prothrombin 3.4.21.5 0.682
4fud 6UPUrokinase-type plasminogen activator 3.4.21.73 0.682
1wtg 3BPCoagulation factor VII 3.4.21.21 0.679
2zhw 12UProthrombin 3.4.21.5 0.678
1gj4 132Prothrombin 3.4.21.5 0.676
2ziq 26UProthrombin 3.4.21.5 0.674
1owk 303Urokinase-type plasminogen activator 3.4.21.73 0.673
1owd 497Urokinase-type plasminogen activator 3.4.21.73 0.672
2zfr 46UProthrombin 3.4.21.5 0.671
4ayv 9MQProthrombin 3.4.21.5 0.671
4ayy 9MXProthrombin 3.4.21.5 0.670
1c4v IH2Prothrombin 3.4.21.5 0.663
2zgx 29UProthrombin 3.4.21.5 0.663
4e5f 0N7Polymerase acidic protein / 0.660
1c1u BAIProthrombin 3.4.21.5 0.656
4fue 7UPUrokinase-type plasminogen activator 3.4.21.73 0.656
2zhe 13UProthrombin 3.4.21.5 0.654
3biv 11UProthrombin 3.4.21.5 0.653
7kme ACE_0BN_CHG_PRRProthrombin 3.4.21.5 0.653
1owi 426Urokinase-type plasminogen activator 3.4.21.73 0.652
1ypm RA4Prothrombin 3.4.21.5 0.651