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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
2bo8 GDX Mannosylglycerate synthase

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity
Align
2bo8 GDXMannosylglycerate synthase / 1.218
4y6u UPGGlucosyl-3-phosphoglycerate synthase 2.4.1.266 0.815
2y4l GDPUncharacterized protein / 0.814
2y4m GDXUncharacterized protein / 0.789
4y6n UPGGlucosyl-3-phosphoglycerate synthase 2.4.1.266 0.776
2bo7 GDPMannosylglycerate synthase / 0.754
3ckq UPGGlucosyl-3-phosphoglycerate synthase 2.4.1.266 0.732
4y9x UPGGlucosyl-3-phosphoglycerate synthase 2.4.1.266 0.721
3o3p GDDGlycosyl transferase, family 2 / 0.718
2zu8 GDDMannosyl-3-phosphoglycerate synthase 2.4.1.217 0.686
2y4k GDPUncharacterized protein / 0.681
2zu9 GDPMannosyl-3-phosphoglycerate synthase 2.4.1.217 0.677
1o23 UPGBeta-1,4-galactosyltransferase 1 / 0.662
2wvl GDDMannosyl-3-phosphogylcerate synthase / 0.662
4a3u FMNNADH:flavin oxidoreductase/NADH oxidase / 0.661
2x5z GDDMannose-1-phosphate guanylyltransferase / 0.657
1foa UD1Alpha-1,3-mannosyl-glycoprotein 2-beta-N-acetylglucosaminyltransferase 2.4.1.101 0.656