Binding Modes are compared using Grim.
For more information, please see the following publication:
Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65
PDB ID | HET | Uniprot Name | EC Number |
---|---|---|---|
2bo8 | GDX | Mannosylglycerate synthase |
PDB ID | HET | Uniprot Name | EC Number | Binding Mode Similarity |
Align |
---|---|---|---|---|---|
2bo8 | GDX | Mannosylglycerate synthase | / | 1.218 | |
4y6u | UPG | Glucosyl-3-phosphoglycerate synthase | 2.4.1.266 | 0.815 | |
2y4l | GDP | Uncharacterized protein | / | 0.814 | |
2y4m | GDX | Uncharacterized protein | / | 0.789 | |
4y6n | UPG | Glucosyl-3-phosphoglycerate synthase | 2.4.1.266 | 0.776 | |
2bo7 | GDP | Mannosylglycerate synthase | / | 0.754 | |
3ckq | UPG | Glucosyl-3-phosphoglycerate synthase | 2.4.1.266 | 0.732 | |
4y9x | UPG | Glucosyl-3-phosphoglycerate synthase | 2.4.1.266 | 0.721 | |
3o3p | GDD | Glycosyl transferase, family 2 | / | 0.718 | |
2zu8 | GDD | Mannosyl-3-phosphoglycerate synthase | 2.4.1.217 | 0.686 | |
2y4k | GDP | Uncharacterized protein | / | 0.681 | |
2zu9 | GDP | Mannosyl-3-phosphoglycerate synthase | 2.4.1.217 | 0.677 | |
1o23 | UPG | Beta-1,4-galactosyltransferase 1 | / | 0.662 | |
2wvl | GDD | Mannosyl-3-phosphogylcerate synthase | / | 0.662 | |
4a3u | FMN | NADH:flavin oxidoreductase/NADH oxidase | / | 0.661 | |
2x5z | GDD | Mannose-1-phosphate guanylyltransferase | / | 0.657 | |
1foa | UD1 | Alpha-1,3-mannosyl-glycoprotein 2-beta-N-acetylglucosaminyltransferase | 2.4.1.101 | 0.656 |