Logo scPDB

sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

Logo CNRS Logo Unistra
Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
2bmb PMM Folic acid synthesis protein FOL1

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
2bmb PMMFolic acid synthesis protein FOL1 / 0.933
2dzb HH2Dihydropteroate synthase / 0.792
1tww HH2Dihydropteroate synthase / 0.752
2y5s 78HDihydropteroate synthase / 0.715
3tye XTZDihydropteroate synthase / 0.704
3tyc XHPDihydropteroate synthase / 0.686
1aj2 2PHDihydropteroate synthase / 0.685
3tr9 PT1Dihydropteroate synthase / 0.684
3h2n B62Dihydropteroate synthase / 0.679
3h24 B55Dihydropteroate synthase / 0.676