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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
2bl9 CP6 Bifunctional dihydrofolate reductase-thymidylate synthase 1.5.1.3

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
2bl9 CP6Bifunctional dihydrofolate reductase-thymidylate synthase 1.5.1.3 0.911
3qg2 CP6Bifunctional dihydrofolate reductase-thymidylate synthase / 0.799
1j3j CP6Bifunctional dihydrofolate reductase-thymidylate synthase 1.5.1.3 0.792
2blb CP7Bifunctional dihydrofolate reductase-thymidylate synthase 1.5.1.3 0.781
3um5 CP6Bifunctional dihydrofolate reductase-thymidylate synthase / 0.780
3qgt CP6Bifunctional dihydrofolate reductase-thymidylate synthase / 0.777
2blc CP7Bifunctional dihydrofolate reductase-thymidylate synthase 1.5.1.3 0.768
2bla CP6Bifunctional dihydrofolate reductase-thymidylate synthase 1.5.1.3 0.753
3cse N22Uncharacterized protein / 0.697
4kd7 9DRDihydrofolate reductase 1.5.1.3 0.692
1m78 CLZDihydrofolate reductase 1.5.1.3 0.683
3um8 1CYBifunctional dihydrofolate reductase-thymidylate synthase / 0.681
3sgy 06WDihydrofolate reductase 1.5.1.3 0.680
4h98 14QUncharacterized protein / 0.675
3d80 Q22Dihydrofolate reductase 1.5.1.3 0.656
1ly3 COGDihydrofolate reductase 1.5.1.3 0.652
3sa2 7DRDihydrofolate reductase / 0.651