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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
2bl4 NAD Lactaldehyde reductase 1.1.1.77

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
2bl4 NADLactaldehyde reductase 1.1.1.77 1.048
1rrm APRLactaldehyde reductase 1.1.1.77 0.757
5br4 NADLactaldehyde reductase 1.1.1.77 0.701
3ox4 NADAlcohol dehydrogenase 2 1.1.1.1 0.658
2uuv FADAlkyldihydroxyacetonephosphate synthase 2.5.1.26 0.657
4jb1 FADUDP-N-acetylenolpyruvoylglucosamine reductase / 0.655