Logo scPDB

sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

Logo CNRS Logo Unistra
Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
2bfr ADP [Protein ADP-ribosylglutamate] hydrolase AF_1521 3.2.2

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
2bfr ADP[Protein ADP-ribosylglutamate] hydrolase AF_1521 3.2.2 0.904
2bfq AR6[Protein ADP-ribosylglutamate] hydrolase AF_1521 3.2.2 0.847
5cb3 APRO-acetyl-ADP-ribose deacetylase / 0.828
4abk AR6Poly [ADP-ribose] polymerase 14 2.4.2.30 0.810
5cb5 APRO-acetyl-ADP-ribose deacetylase / 0.803
3v2b AR6Poly [ADP-ribose] polymerase 15 2.4.2.30 0.799
5cms APRO-acetyl-ADP-ribose deacetylase / 0.704
3q71 AR6Poly [ADP-ribose] polymerase 14 2.4.2.30 0.687
5fsx ADPUncharacterized protein / 0.687
4d86 ADPPoly [ADP-ribose] polymerase 14 2.4.2.30 0.683
1txz APRProbable ADP-ribose 1''-phosphate phosphatase YML087W 3.1.3.84 0.677
3iid APRCore histone macro-H2A.1 / 0.672
4j5r A1RO-acetyl-ADP-ribose deacetylase 1 3.5.1 0.670
3iif APRCore histone macro-H2A.1 / 0.653
3vfq AR6Poly [ADP-ribose] polymerase 14 2.4.2.30 0.651
2fav APRNonstructural polyprotein pp1a / 0.650