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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
2bfo NDP Pteridine reductase 1 1.5.1.33

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
2bfo NDPPteridine reductase 1 1.5.1.33 1.338
4clo NAPPteridine reductase / 1.227
3h4v NAPPteridine reductase 1 1.5.1.33 1.223
3bmo NAPPteridine reductase / 1.103
5bt9 NAP3-oxoacyl-(Acyl-carrier-protein) reductase / 1.006
3iah NAPPutative oxoacyl-(Acyl carrier protein) reductase / 0.838
1rwb NADGlucose 1-dehydrogenase 1.1.1.47 0.796
2ggs NDPdTDP-4-dehydrorhamnose reductase / 0.774
2wdz NADGalactitol dehydrogenase / 0.768
4fj0 NAP17beta-hydroxysteroid dehydrogenase / 0.767
3r3s NADPutative oxidoreductase / 0.762
5jyd NADShort chain dehydrogenase / 0.762
3qwf NAP17beta-hydroxysteroid dehydrogenase / 0.760
1n5d NDPCarbonyl reductase [NADPH] 1 / 0.755
1w73 NAP2,4-dienoyl-CoA reductase, mitochondrial 1.3.1.34 0.755
1cyd NDPCarbonyl reductase [NADPH] 2 1.1.1.184 0.753
3o26 NDPSalutaridine reductase / 0.752
1w8d NAP2,4-dienoyl-CoA reductase, mitochondrial 1.3.1.34 0.751
2c54 NADGDP-mannose 3,5-epimerase 5.1.3.18 0.747
4dc1 NDPPutative ketoacyl reductase 1.3.1 0.747
4b79 NADProbable short-chain dehydrogenase / 0.746
4fj2 NAP17beta-hydroxysteroid dehydrogenase / 0.745
1sny NAPLD36273p / 0.744
1gco NADGlucose 1-dehydrogenase 1.1.1.47 0.743
1gee NADGlucose 1-dehydrogenase 1.1.1.47 0.743
1edo NAP3-oxoacyl-[acyl-carrier-protein] reductase 1, chloroplastic 1.1.1.100 0.740
3gy0 NAPNAD(P)-dependent oxidoreductase / 0.740
3bhi NAPCarbonyl reductase [NADPH] 1 1.1.1.184 0.739
4j7x NAPSepiapterin reductase 1.1.1.153 0.738
1h5q NAPNADP-dependent mannitol dehydrogenase 1.1.1.138 0.736
5lc1 NADL-threonine 3-dehydrogenase / 0.736
1oaa NAPSepiapterin reductase 1.1.1.153 0.735
3ijr NADOxidoreductase, short chain dehydrogenase/reductase family / 0.734
1g6k NADGlucose 1-dehydrogenase 1.1.1.47 0.733
3ru7 NADUDP-N-acetylglucosamine 4-epimerase / 0.725
2dte NAIGlucose 1-dehydrogenase related protein / 0.723
4hp8 NAP2-deoxy-D-gluconate 3-dehydrogenase / 0.723
2b69 NADUDP-glucuronic acid decarboxylase 1 4.1.1.35 0.719
2pk3 A2RGDP-6-deoxy-D-mannose reductase / 0.719
5jy1 NADPutative short-chain dehydrogenase/reductase / 0.718
1ipe NDPTropinone reductase 2 1.1.1.236 0.717
2p5y NADUDP-glucose 4-epimerase / 0.717
3d3w NAPL-xylulose reductase 1.1.1.10 0.716
2c29 NAPDihydroflavonol 4-reductase / 0.715
4fj1 NAP17beta-hydroxysteroid dehydrogenase / 0.714
4kwh NAPReductase homolog / 0.714
2d1y NADOxidoreductase, short-chain dehydrogenase/reductase family / 0.713
2wyv NADEnoyl-[acyl-carrier-protein] reductase [NADH] / 0.713
4ej0 NAPADP-L-glycero-D-manno-heptose-6-epimerase / 0.712
1pr9 NAPL-xylulose reductase 1.1.1.10 0.711
3ehe NADUDP-glucose 4-epimerase (GalE-1) / 0.711
3mje NDPAmphB / 0.711
4id9 NADPutative UDP-glucose 4-epimerase / 0.711
4yai NAIC alpha-dehydrogenase / 0.709
3aw9 NADNAD-dependent epimerase/dehydratase / 0.708
1n7h NDPGDP-mannose 4,6 dehydratase 2 4.2.1.47 0.707
3nug NADPyridoxal 4-dehydrogenase 1.1.1.107 0.706
3tsc NADUncharacterized protein / 0.706
4o1m NADEnoyl-acyl carrier reductase / 0.706
5ig2 NADShort-chain dehydrogenase/reductase SDR / 0.705
1e3s NAD3-hydroxyacyl-CoA dehydrogenase type-2 1.1.1.35 0.704
2nq8 ZIDEnoyl-ACP reductase / 0.704
3o03 NAPDehydrogenase with different specificities (Related to short-chain alcohol dehydrogenase) / 0.704
1x7h NDPPutative ketoacyl reductase 1.3.1 0.703
1xg5 NAPDehydrogenase/reductase SDR family member 11 / 0.703
2q1t NADPutative nucleotide sugar epimerase/ dehydratase / 0.703
3rku NAPNADP-dependent 3-hydroxy acid dehydrogenase / 0.703
3ru9 NADUDP-N-acetylglucosamine 4-epimerase / 0.703
1p44 NADEnoyl-[acyl-carrier-protein] reductase [NADH] 1.3.1.9 0.702
2z1m NDPGDP-mannose 4,6-dehydratase / 0.702
4zju NADEnoyl-[acyl-carrier-protein] reductase [NADH] / 0.702
1n7g NDPGDP-mannose 4,6 dehydratase 2 4.2.1.47 0.701
3icp NADNAD-dependent epimerase/dehydratase / 0.700
3ko8 NADNAD-dependent epimerase/dehydratase / 0.699
2c59 NADGDP-mannose 3,5-epimerase 5.1.3.18 0.698
4dbz NDPPutative ketoacyl reductase 1.3.1 0.698
4z3d NDPCarbonyl reductase [NADPH] 1 1.1.1.184 0.697
2q4b NAPUncharacterized protein At5g02240 / 0.695
3vdq NAD3-hydroxybutyrate dehydrogenase / 0.695
3sxp NADADP-L-glycero-D-mannoheptose-6-epimerase / 0.694
2nnl NAPDihydroflavonol 4-reductase 1.1.1.219 0.693
2q2q NADBeta-D-hydroxybutyrate dehydrogenase / 0.693
4hbg NDP3-oxoacyl-[acyl-carrier-protein] reductase 1.1.1.100 0.693
5idw NAPShort-chain dehydrogenase/reductase SDR / 0.692
1t2a NDPGDP-mannose 4,6 dehydratase 4.2.1.47 0.691
2ntj P1HEnoyl-[acyl-carrier-protein] reductase [NADH] 1.3.1.9 0.691
3f1k NAPUncharacterized oxidoreductase YciK 1 0.691
3w8e NAD3-hydroxybutyrate dehydrogenase / 0.691
1xkq NDPUncharacterized protein / 0.690
3ai3 NDPNADPH-sorbose reductase / 0.689
1n2s NAIdTDP-4-dehydrorhamnose reductase 1.1.1.133 0.688
2q2v NADBeta-D-hydroxybutyrate dehydrogenase / 0.688
1e3w NAD3-hydroxyacyl-CoA dehydrogenase type-2 1.1.1.35 0.686
1rpn NDPGDP-mannose 4,6-dehydratase / 0.685
2ag5 NAD3-hydroxybutyrate dehydrogenase type 2 / 0.685
4e5y NDPGDP-L-fucose synthase 1.1.1.271 0.685
1zem NADXylitol dehydrogenase / 0.684
2o23 NAD3-hydroxyacyl-CoA dehydrogenase type-2 1.1.1.35 0.684
2z95 NDPGDP-mannose 4,6-dehydratase / 0.684
3a28 NADL-2,3-butanediol dehydrogenase 1.1.1.76 0.683
3ndr NADPyridoxal 4-dehydrogenase 1.1.1.107 0.683
3tox NAPPutative oxidoreductase / 0.683
4qec NAPElxO / 0.683
4rf2 NAPNADPH dependent R-specific alcohol dehydrogenase / 0.683
2b4q NAPRhamnolipids biosynthesis 3-oxoacyl-[acyl-carrier-protein] reductase 1.1.1.100 0.682
4nbt NAD3-oxoacyl-[acyl-carrier-protein] reductase / 0.682
2rbe NDPCorticosteroid 11-beta-dehydrogenase isozyme 1 1.1.1.146 0.681
1fk8 NAD3-alpha-hydroxysteroid dehydrogenase/carbonyl reductase 1.1.1.50 0.680
2nv6 ZIDEnoyl-[acyl-carrier-protein] reductase [NADH] 1.3.1.9 0.680
4dmm NAP3-oxoacyl-[acyl-carrier-protein] reductase / 0.680
2hrb NAPCarbonyl reductase [NADPH] 3 1.1.1.184 0.679
4iqg NAPShort-chain dehydrogenase/reductase SDR / 0.679
3a9w NADNDP-sugar epimerase / 0.678
4bmv NAPShort-chain dehydrogenase / 0.678
1u7t TDT3-hydroxyacyl-CoA dehydrogenase type-2 1.1.1.35 0.677
2ekp NAD2-deoxy-D-gluconate 3-dehydrogenase / 0.677
2gn8 NAPUDP-N-acetylglucosamine 4,6-dehydratase (inverting) 4.2.1.115 0.677
3o4r NAPDehydrogenase/reductase SDR family member 4 1.1.1.184 0.676
4wec NADShort chain dehydrogenase / 0.676
3pgx NADUncharacterized NAD-dependent oxidoreductase MAP_4146 / 0.675
3wmx NADNAD dependent epimerase/dehydratase / 0.675
4hxy NDPPlm1 / 0.675
4is3 NAD3alpha-hydroxy bile acid-CoA-ester 3-dehydrogenase 2 1.17.98.1 0.675
1kvr NADUDP-glucose 4-epimerase 5.1.3.2 0.674
2b37 NADEnoyl-[acyl-carrier-protein] reductase [NADH] 1.3.1.9 0.674
2zat NAPDehydrogenase/reductase SDR family member 4 1.1.1.184 0.674
3sj7 NDP3-oxoacyl-(Acyl-carrier-protein) reductase, putative / 0.674
4fc7 NAPPeroxisomal 2,4-dienoyl-CoA reductase 1.3.1.34 0.674
3lu1 NADUDP-N-acetylglucosamine 4-epimerase / 0.673
1i3l NADUDP-glucose 4-epimerase / 0.671
3p19 NDPPutative blue fluorescent protein / 0.671
1x7g NAPPutative ketoacyl reductase 1.3.1 0.670
4c7k NAPCorticosteroid 11-beta-dehydrogenase isozyme 1 1.1.1.146 0.670
3rue NADUDP-N-acetylglucosamine 4-epimerase / 0.668
2aqh NAIEnoyl-[acyl-carrier-protein] reductase [NADH] 1.3.1.9 0.667
2yut NAPPutative short-chain oxidoreductase / 0.667
3ruf NADUDP-N-acetylglucosamine 4-epimerase / 0.667
1bxk NADdTDP-glucose 4,6-dehydratase 2 / 0.666
3rj9 NADAlcohol dehydrogenase 1.1.1.1 0.666
2ztu NADD(-)-3-hydroxybutyrate dehydrogenase / 0.665
4yr9 NADL-threonine 3-dehydrogenase, mitochondrial 1.1.1.103 0.665
5cpb NADEnoyl-[acyl-carrier-protein] reductase [NADH] 1.3.1.9 0.664
1kc1 NDPdTDP-4-dehydrorhamnose reductase 1.1.1.133 0.663
3zqa NDPNAD/NADP-dependent betaine aldehyde dehydrogenase / 0.663
1b2l NDCAlcohol dehydrogenase 1.1.1.1 0.662
1g1a NADdTDP-glucose 4,6-dehydratase / 0.662
4hwk NAPSepiapterin reductase 1.1.1.153 0.662
4idg NADPutative UDP-glucose 4-epimerase / 0.662
2pzj NADPutative nucleotide sugar epimerase/ dehydratase / 0.659
1wnt NAPL-xylulose reductase 1.1.1.10 0.658
2q1u NADPutative nucleotide sugar epimerase/ dehydratase / 0.657
4u7w NDPMxaA / 0.657
2gdz NAD15-hydroxyprostaglandin dehydrogenase [NAD(+)] 1.1.1.141 0.656
2yy7 NADL-threonine dehydrogenase / 0.656
4lis NADUDP-glucose 4-epimerase (Eurofung) / 0.656
2qw8 NAPEugenol synthase 1 1.1.1.318 0.654
3uce NDPDehydrogenase / 0.654
4b8w NAPGDP-L-fucose synthase 1.1.1.271 0.654
4k6f NAPPutative Acetoacetyl-CoA reductase / 0.654
3tn7 NJPShort-chain alcohol dehydrogenase / 0.653
5jla NADPutative short-chain dehydrogenase/reductase / 0.653
1ahh NAD7-alpha-hydroxysteroid dehydrogenase 1.1.1.159 0.652
2ydx NAPMethionine adenosyltransferase 2 subunit beta / 0.652
4b8z NAPGDP-L-fucose synthase 1.1.1.271 0.652
4gll NADUDP-glucuronic acid decarboxylase 1 4.1.1.35 0.652
1ae1 NAPTropinone reductase 1 / 0.651
3ak4 NADNADH-dependent quinuclidinone reductase / 0.651
4bii NADEnoyl-[acyl-carrier-protein] reductase [NADH] 1.3.1.9 0.651
2idz ZIDEnoyl-[acyl-carrier-protein] reductase [NADH] 1.3.1.9 0.650
3w8f NAD3-hydroxybutyrate dehydrogenase / 0.650