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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
2bf4 FAD NADPH--cytochrome P450 reductase

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
2bf4 FADNADPH--cytochrome P450 reductase / 1.314
2bn4 FADNADPH--cytochrome P450 reductase / 1.129
2bpo FADNADPH--cytochrome P450 reductase / 1.070
3qe2 FADNADPH--cytochrome P450 reductase / 0.961
4y9u FADNADPH--cytochrome P450 reductase / 0.944
1j9z FADNADPH--cytochrome P450 reductase / 0.942
1ogi FADFerredoxin--NADP reductase 1.18.1.2 0.939
3qft FADNADPH--cytochrome P450 reductase / 0.939
4y7c FADNADPH--cytochrome P450 reductase / 0.939
3ojw FADNADPH--cytochrome P450 reductase / 0.933
2rc5 FADFerredoxin--NADP reductase / 0.930
3qfc FADNADPH--cytochrome P450 reductase / 0.928
1gjr FADFerredoxin--NADP reductase 1.18.1.2 0.927
1ja1 FADNADPH--cytochrome P450 reductase / 0.918
3qfs FADNADPH--cytochrome P450 reductase / 0.916
1ogj FADFerredoxin--NADP reductase 1.18.1.2 0.913
1f20 FADNitric oxide synthase, brain 1.14.13.39 0.908
4yaf FADNADPH--cytochrome P450 reductase / 0.900
1amo FADNADPH--cytochrome P450 reductase / 0.897
1w35 FADFerredoxin--NADP reductase 1.18.1.2 0.896
2rc6 FADFerredoxin--NADP reductase / 0.896
1qgy FADFerredoxin--NADP reductase 1.18.1.2 0.889
2vyq FADFerredoxin--NADP reductase 1.18.1.2 0.886
1bx1 FADFerredoxin--NADP reductase, chloroplastic 1.18.1.2 0.882
1w87 FADFerredoxin--NADP reductase 1.18.1.2 0.881
4y9r FADNADPH--cytochrome P450 reductase / 0.880
1qh0 FADFerredoxin--NADP reductase 1.18.1.2 0.877
4wqm FADToluene-4-monooxygenase electron transfer component 1.18.1.3 0.865
1gvh FADFlavohemoprotein / 0.863
1umk FADNADH-cytochrome b5 reductase 3 1.6.2.2 0.863
1w34 FADFerredoxin--NADP reductase 1.18.1.2 0.861
1cqx FADFlavohemoprotein / 0.854
1bx0 FADFerredoxin--NADP reductase, chloroplastic 1.18.1.2 0.852
1b2r FADFerredoxin--NADP reductase 1.18.1.2 0.849
3w5u FADFerredoxin / 0.844
1ja0 FADNADPH--cytochrome P450 reductase / 0.843
1tll FADNitric oxide synthase, brain 1.14.13.39 0.843
1e62 FADFerredoxin--NADP reductase 1.18.1.2 0.841
2bgj FADNADPH:ferredoxin reductase / 0.839
2xnc FADFerredoxin--NADP reductase, leaf isozyme, chloroplastic 1.18.1.2 0.839
1e64 FADFerredoxin--NADP reductase 1.18.1.2 0.838
3w5h FADNADH-cytochrome b5 reductase 3 1.6.2.2 0.837
4fk8 FADFerredoxin--NADP reductase / 0.833
2vnj FADNADPH:ferredoxin reductase / 0.830
2bgi FADNADPH:ferredoxin reductase / 0.827
3ojx FADNADPH--cytochrome P450 reductase / 0.825
3qfr FADNADPH--cytochrome P450 reductase / 0.816
4yau FADNADPH--cytochrome P450 reductase / 0.815
1fnd FADFerredoxin--NADP reductase, chloroplastic 1.18.1.2 0.814
3w2e FADNADH-cytochrome b5 reductase 3 1.6.2.2 0.813
1que FADFerredoxin--NADP reductase 1.18.1.2 0.811
2qdx FADFerredoxin--NADP+ reductase / 0.805
3w2f FADNADH-cytochrome b5 reductase 3 1.6.2.2 0.802
4yao FADNADPH--cytochrome P450 reductase / 0.801
3fpk FADFerredoxin-NADP reductase / 0.800
1sm4 FADFerredoxin--NADP reductase / 0.794
2b5o FADFerredoxin--NADP reductase 1.18.1.2 0.792
3mhp FADFerredoxin--NADP reductase, leaf isozyme, chloroplastic 1.18.1.2 0.790
4c43 FADFerredoxin--NADP reductase 1.18.1.2 0.786
1fdr FADFerredoxin--NADP reductase 1.18.1.2 0.785
1i7p FADNADH-cytochrome b5 reductase 3 1.6.2.2 0.780
1bjk FADFerredoxin--NADP reductase 1.18.1.2 0.778
1krh FADBenzoate 1,2-dioxygenase electron transfer component 1.18.1.3 0.778
2eix FADNADH-cytochrome b5 reductase / 0.775
2r6h FADNa(+)-translocating NADH-quinone reductase subunit F / 0.775
1qg0 FADFerredoxin--NADP reductase, leaf isozyme, chloroplastic 1.18.1.2 0.773
1h42 FADFerredoxin--NADP reductase 1.18.1.2 0.772
3zc3 FADFerredoxin--NADP reductase 1.18.1.2 0.771
3vo2 FADFerredoxin--NADP reductase / 0.766
1go2 FADFerredoxin--NADP reductase 1.18.1.2 0.764
1qgz FADFerredoxin--NADP reductase 1.18.1.2 0.764
4k1x FADNADPH:ferredoxin reductase / 0.761
1gaq FADFerredoxin / 0.759
1fnc FDAFerredoxin--NADP reductase, chloroplastic 1.18.1.2 0.757
1ep3 FADDihydroorotate dehydrogenase B (NAD(+)), electron transfer subunit / 0.755
4b4d FADFerredoxin-NADP reductase / 0.755
1gaw FADFerredoxin / 0.751
1gr1 FADFerredoxin--NADP reductase 1.18.1.2 0.751
4uaj FADNa(+)-translocating NADH-quinone reductase subunit F / 0.751
3zbt FADFerredoxin--NADP reductase 1.18.1.2 0.746
2ptf FMNUncharacterized protein MTH_863 / 0.743
1h85 FADFerredoxin--NADP reductase 1.18.1.2 0.736
2ok8 FADFerredoxin--NADP reductase, apicoplast / 0.731
4hms FMNPhenazine biosynthesis protein PhzG 1.4 0.729
2gpj FADSiderophore-interacting protein / 0.728
4af7 FADFerredoxin--NADP reductase, leaf isozyme, chloroplastic 1.18.1.2 0.726
4bpr FADFerredoxin--NADP reductase 1.18.1.2 0.725
1e63 FADFerredoxin--NADP reductase 1.18.1.2 0.723
2vnh FADNADPH:ferredoxin reductase / 0.720
1fnb FADFerredoxin--NADP reductase, chloroplastic 1.18.1.2 0.719
2iml FMNUncharacterized protein / 0.719
3e4v FMNUncharacterized protein / 0.719
3jqr FADFerredoxin--NADP reductase, apicoplast / 0.717
4ylf FADDihydroorotate dehydrogenase B (NAD(+)), electron transfer subunit homolog / 0.713
2dji FADPyruvate oxidase / 0.712
1wlk FMNFMN-binding protein / 0.706
1ewy FADFerredoxin--NADP reductase 1.18.1.2 0.705
3crz FADFerredoxin--NADP+ reductase / 0.705
1a8p FADFerredoxin--NADP reductase / 0.704
2i51 FMNPyridoxamine 5'-phosphate oxidase-related, FMN-binding / 0.704
1n9l FMNPutative blue light receptor / 0.701
1v5e FADPyruvate oxidase / 0.701
1pkv RBFRiboflavin synthase 2.5.1.9 0.699
2i02 FMNPyridoxamine 5'-phosphate oxidase-related, FMN-binding / 0.698
3is2 FADVivid PAS protein VVD / 0.698
2pia FMNPhthalate dioxygenase reductase / 0.696
3d72 FADVivid PAS protein VVD / 0.696
5cho FADFlavin reductase / 0.696
4hia FMNLOV protein / 0.690
3hjk FADVivid PAS protein VVD / 0.686
2pd8 FADVivid PAS protein VVD / 0.684
3r5z F42Uncharacterized protein / 0.684
2vnk FADNADPH:ferredoxin reductase / 0.682
1i0s FMNFerric-chelate reductase (NAD(P)H) / 0.681
1ib0 FADNADH-cytochrome b5 reductase 3 1.6.2.2 0.681
3bnk FMNFlavoredoxin / 0.680
1b8s FADCholesterol oxidase 1.1.3.6 0.679
5j4e FMNSensory box protein / 0.679
3a3b RBFLumazine protein / 0.678
1flm FMNFMN-binding protein / 0.676
1rz1 FADPhenol 2-hydroxylase component B / 0.675
4rek FADCholesterol oxidase 1.1.3.6 0.675
1usc FMNMonooxygenase / 0.674
4hj4 FMNLOV protein / 0.673
4rhe FMNFlavin prenyltransferase UbiX / 0.673
2cnd FADNitrate reductase [NADH] 1.7.1.1 0.671
1eje FMNProtein MTH_152 / 0.669
2pdt FADVivid PAS protein VVD / 0.669
4l82 FMNUncharacterized protein / 0.668
4af6 FADFerredoxin--NADP reductase, leaf isozyme, chloroplastic 1.18.1.2 0.666
3a20 FMNFMN-binding protein / 0.664
3gyi FADCholesterol oxidase 1.1.3.6 0.664
2ed4 FAD4-hydroxyphenylacetate 3-monooxygenase reductase component 1.5.1.36 0.662
1sbz FMNProbable UbiX-like flavin prenyltransferase / 0.659
2nr4 FMNConserved protein / 0.658
2ok7 FADFerredoxin--NADP reductase, apicoplast / 0.658
3pft FMNFlavin reductase / 0.658
3vy2 FMNFMN-binding protein / 0.656
4hmx FMNPyridoxamine 5'-phosphate oxidase / 0.656
1ndh FADNADH-cytochrome b5 reductase 3 1.6.2.2 0.655
2z6d FMNPhototropin-2 2.7.11.1 0.655
1rz0 FADPhenol 2-hydroxylase component B / 0.653
2a1u FADElectron transfer flavoprotein subunit alpha, mitochondrial / 0.652
2ou5 FMNPyridoxamine 5'-phosphate oxidase-related FMN-binding protein / 0.652
3a6q FMNFMN-binding protein / 0.651
1n07 FMNRiboflavin kinase 2.7.1.26 0.650
3a6r FMNFMN-binding protein / 0.650