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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
2bdy UNB Prothrombin 3.4.21.5

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
2bdy UNBProthrombin 3.4.21.5 1.053
2znk 31UProthrombin 3.4.21.5 0.828
4bah MELProthrombin 3.4.21.5 0.818
4bam MM9Prothrombin 3.4.21.5 0.818
1k22 MELProthrombin 3.4.21.5 0.813
2ziq 26UProthrombin 3.4.21.5 0.813
4bak M67Prothrombin 3.4.21.5 0.805
4ban M6SProthrombin 3.4.21.5 0.804
2zhf 49UProthrombin 3.4.21.5 0.802
4baq M4ZProthrombin 3.4.21.5 0.801
2zi2 24UProthrombin 3.4.21.5 0.800
3utu 1TSProthrombin 3.4.21.5 0.796
3biv 11UProthrombin 3.4.21.5 0.792
3biu 10UProthrombin 3.4.21.5 0.786
2zhe 13UProthrombin 3.4.21.5 0.784
2zfq 45UProthrombin 3.4.21.5 0.780
2zfr 46UProthrombin 3.4.21.5 0.773
4bao MVFProthrombin 3.4.21.5 0.773
2anm CDOProthrombin 3.4.21.5 0.767
1d4p BPPProthrombin 3.4.21.5 0.763
4ayy 9MXProthrombin 3.4.21.5 0.763
1riw OSCProthrombin 3.4.21.5 0.757
1c4v IH2Prothrombin 3.4.21.5 0.751
1ypg UIRProthrombin 3.4.21.5 0.749
2cf8 ESHProthrombin 3.4.21.5 0.748
1c4u IH1Prothrombin 3.4.21.5 0.746
2v3o I26Prothrombin 3.4.21.5 0.745
1k21 IGNProthrombin 3.4.21.5 0.740
1c5n ESIProthrombin 3.4.21.5 0.732
1o0d 163Prothrombin 3.4.21.5 0.731
1wtg 3BPCoagulation factor VII 3.4.21.21 0.730
2cf9 348Prothrombin 3.4.21.5 0.723
2cn0 F25Prothrombin 3.4.21.5 0.722
2gde SN3Prothrombin 3.4.21.5 0.715
4e7r 0NWProthrombin 3.4.21.5 0.703
1ypk CCRProthrombin 3.4.21.5 0.696
4ayv 9MQProthrombin 3.4.21.5 0.694
1ype UIPProthrombin 3.4.21.5 0.692
1oyt FSNProthrombin 3.4.21.5 0.691
1z71 L17Prothrombin 3.4.21.5 0.690
1nm6 L86Prothrombin 3.4.21.5 0.681
2r2m I50Prothrombin 3.4.21.5 0.680
1vzq SHYProthrombin 3.4.21.5 0.664
1owi 426Urokinase-type plasminogen activator 3.4.21.73 0.661
1drt PCVClavaminate synthase 1 1.14.11.21 0.660
1kts C24Prothrombin 3.4.21.5 0.660
4fue 7UPUrokinase-type plasminogen activator 3.4.21.73 0.660
1jwt BLIProthrombin 3.4.21.5 0.659
1ypj UIBProthrombin 3.4.21.5 0.656
2bxt C2DProthrombin 3.4.21.5 0.653
1vja 7INUrokinase-type plasminogen activator 3.4.21.73 0.652
1ypl RA8Prothrombin 3.4.21.5 0.652
1gmc PRO_GLY_ALA_TYRChymotrypsinogen A 3.4.21.1 0.651
2zeb 11MTryptase alpha/beta-1 3.4.21.59 0.651
1t4v 14AProthrombin 3.4.21.5 0.650