Logo scPDB

sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

Logo CNRS Logo Unistra
Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
2bdj HET Proto-oncogene tyrosine-protein kinase Src 2.7.10.2

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
2bdj HETProto-oncogene tyrosine-protein kinase Src 2.7.10.2 1.062
2bdf 24AProto-oncogene tyrosine-protein kinase Src 2.7.10.2 0.735
4gk2 L66Ephrin type-A receptor 3 2.7.10.1 0.708
2gqg 1N1Tyrosine-protein kinase ABL1 2.7.10.2 0.681
4xli 1N1Abelson tyrosine-protein kinase 2 2.7.10.2 0.669
2y6o 1N1Ephrin type-A receptor 4 2.7.10.1 0.659
2hk5 1BMTyrosine-protein kinase HCK 2.7.10.2 0.657
2zva 1N1Tyrosine-protein kinase Lyn 2.7.10.2 0.657
4f65 0S9Fibroblast growth factor receptor 1 / 0.650