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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
2b7z MK1 Gag-Pol polyprotein

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
2b7z MK1Gag-Pol polyprotein / 1.200
1sgu MK1Gag-Pol polyprotein 3.4.23.16 0.995
2r5p MK1Gag-Pol polyprotein / 0.840
1k6t XN1Gag-Pol polyprotein 3.4.23.16 0.770
2bpw 1INGag-Pol polyprotein 3.4.23.16 0.764
2uy0 HV1Gag-Pol polyprotein 3.4.23.16 0.763
1w5w BE4Gag-Pol polyprotein 3.4.23.16 0.726
3wsj MK1Protease / 0.717
1npa 3NHGag-Pol polyprotein 3.4.23.16 0.703
1npw LGZGag-Pol polyprotein 3.4.23.16 0.703
2q63 1UNGag-Pol polyprotein 3.4.23.16 0.697
1ebz BECGag-Pol polyprotein 3.4.23.16 0.692
2bb9 AKCGag-Pol polyprotein 3.4.23.16 0.691
1c6y MK1Protease / 0.687
2avs MK1Gag-Pol polyprotein 3.4.23.16 0.681
1ec1 BEEGag-Pol polyprotein 3.4.23.16 0.679
2cen 4AHProtease / 0.679
4a4q UX9Pol protein / 0.679
2fxd DR7Pol polyprotein / 0.676
1odw 0E8Gag-Pol polyprotein 3.4.23.16 0.670
2cej 1AHPol protein / 0.670
1odx 0E8Gag-Pol polyprotein 3.4.23.16 0.668
2rkg AB1Pol protein / 0.668
4hdf G52Gag-Pol polyprotein 3.4.23.16 0.662
3sm2 478Putative gag-pro-pol polyprotein / 0.661
2avv MK1Gag-Pol polyprotein 3.4.23.16 0.660
2bbb HH1Gag-Pol polyprotein 3.4.23.16 0.659
2wl0 5AHGag-Pol polyprotein / 0.658
1sdu MK1Gag-Pol polyprotein 3.4.23.16 0.655
3gga GGWGag-Pol polyprotein / 0.655
1yt9 OISGag-Pol polyprotein / 0.654
2r5q 1UNGag-Pol polyprotein / 0.654
3d1x ROCGag-Pol polyprotein 3.4.23.16 0.654
1a8g 2Z4Gag-Pol polyprotein 3.4.23.16 0.653
3jvw DMPGag-Pol polyprotein 3.4.23.16 0.653
1ec2 BEJGag-Pol polyprotein 3.4.23.16 0.651
2bpx MK1Gag-Pol polyprotein 3.4.23.16 0.651