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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
2b5v NAP Glucose 1-dehydrogenase

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
2b5v NAPGlucose 1-dehydrogenase / 1.056
2vwq NAPGlucose 1-dehydrogenase / 1.046
2vwh NAPGlucose 1-dehydrogenase / 1.006
2vwp NDPGlucose 1-dehydrogenase / 0.947
1yb5 NAPQuinone oxidoreductase 1.6.5.5 0.695
3wle NAD(R)-specific carbonyl reductase / 0.689
1x7d NADPutative ornithine cyclodeaminase / 0.685
1uxj NADMalate dehydrogenase / 0.684
3jv7 NADSecondary alcohol dehydrogenase / 0.681
1h2b NAJNAD-dependent alcohol dehydrogenase / 0.680
1pzh NADLactate dehydrogenase / 0.680
1axe NADAlcohol dehydrogenase E chain 1.1.1.1 0.678
3wid NAPGlucose 1-dehydrogenase / 0.677
1lde NADAlcohol dehydrogenase E chain 1.1.1.1 0.676
4dlb NADS-(hydroxymethyl)glutathione dehydrogenase / 0.675
4imp NDPPolyketide synthase extender modules 3-4 / 0.675
5cdt NAJAlcohol dehydrogenase E chain 1.1.1.1 0.674
5cdg NAJAlcohol dehydrogenase E chain 1.1.1.1 0.673
1hf3 NADAlcohol dehydrogenase E chain 1.1.1.1 0.672
2dt5 NADRedox-sensing transcriptional repressor Rex / 0.670
5mdh NADMalate dehydrogenase, cytoplasmic 1.1.1.37 0.664
1ma0 NADAlcohol dehydrogenase class-3 1.1.1.1 0.662
4fpy 0V8Sialidase B 3.2.1.18 0.661
1mgo NADAlcohol dehydrogenase E chain 1.1.1.1 0.660
5kje NAJAlcohol dehydrogenase E chain 1.1.1.1 0.660
1ib6 NADMalate dehydrogenase / 0.659
1pr9 NAPL-xylulose reductase 1.1.1.10 0.659
1u3v NADAlcohol dehydrogenase 1B 1.1.1.1 0.659
2cda NAPGlucose 1-dehydrogenase / 0.659
3p19 NDPPutative blue fluorescent protein / 0.659
4dxh NAJAlcohol dehydrogenase E chain 1.1.1.1 0.659
4wlv NADMalate dehydrogenase, mitochondrial 1.1.1.37 0.659
5kcz NAJAlcohol dehydrogenase E chain 1.1.1.1 0.659
5kj1 NAJAlcohol dehydrogenase E chain 1.1.1.1 0.659
5kj6 NAJAlcohol dehydrogenase E chain 1.1.1.1 0.659
5kjc NAJAlcohol dehydrogenase E chain 1.1.1.1 0.659
5kjf NAJAlcohol dehydrogenase E chain 1.1.1.1 0.659
1ae1 NAPTropinone reductase 1 / 0.658
1t2d NADL-lactate dehydrogenase 1.1.1.27 0.658
2ohx NADAlcohol dehydrogenase E chain 1.1.1.1 0.658
5kcp NAJAlcohol dehydrogenase E chain 1.1.1.1 0.658
3two NDPMannitol dehydrogenase / 0.656
1ht0 NADAlcohol dehydrogenase 1C 1.1.1.1 0.655
2oxi NADAlcohol dehydrogenase E chain 1.1.1.1 0.655
2gmv PEPPhosphoenolpyruvate carboxykinase, cytosolic [GTP] 4.1.1.32 0.654
5env NADAlcohol dehydrogenase 1 1.1.1.1 0.653
1gv0 NADMalate dehydrogenase / 0.651
1het NADAlcohol dehydrogenase E chain 1.1.1.1 0.651
4nd4 NADLactate dehydrogenase, adjacent gene encodes predicted malate dehydrogenase / 0.651
4ejm NAPPutative zinc-binding dehydrogenase / 0.650