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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
2b55 D31 Cyclin-dependent kinase 2 2.7.11.22

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
2b55 D31Cyclin-dependent kinase 2 2.7.11.22 1.073
2b52 D42Cyclin-dependent kinase 2 2.7.11.22 0.738
4fks 46KCyclin-dependent kinase 2 2.7.11.22 0.735
3ezv EZVCyclin-dependent kinase 2 2.7.11.22 0.734
3rkb 12ZCyclin-dependent kinase 2 2.7.11.22 0.723
1ke7 LS3Cyclin-dependent kinase 2 2.7.11.22 0.718
4fkt 48KCyclin-dependent kinase 2 2.7.11.22 0.716
4fkw 62KCyclin-dependent kinase 2 2.7.11.22 0.697
2vti LZ3Cyclin-dependent kinase 2 2.7.11.22 0.694
4fkv 61KCyclin-dependent kinase 2 2.7.11.22 0.694
3tiz 3TICyclin-dependent kinase 2 2.7.11.22 0.692
1ke6 LS2Cyclin-dependent kinase 2 2.7.11.22 0.688
3lfs A07Cyclin-dependent kinase 2 2.7.11.22 0.688
4fkp LS5Cyclin-dependent kinase 2 2.7.11.22 0.683
1gih 1PUCyclin-dependent kinase 2 2.7.11.22 0.682
3lfq A28Cyclin-dependent kinase 2 2.7.11.22 0.682
4bgh 3I6Cyclin-dependent kinase 2 2.7.11.22 0.681
2wip P49Cyclin-dependent kinase 2 2.7.11.22 0.678
4fki 09KCyclin-dependent kinase 2 2.7.11.22 0.670
4fv4 EK7Mitogen-activated protein kinase 1 2.7.11.24 0.664
1vyw 292Cyclin-dependent kinase 2 2.7.11.22 0.662
1ke9 LS5Cyclin-dependent kinase 2 2.7.11.22 0.660
1oiq HDUCyclin-dependent kinase 2 2.7.11.22 0.658
3i4b Z48Glycogen synthase kinase-3 beta 2.7.11.26 0.658
2r3r 6SCCyclin-dependent kinase 2 2.7.11.22 0.657
4fkj 11KCyclin-dependent kinase 2 2.7.11.22 0.655
2vtj LZ4Cyclin-dependent kinase 2 2.7.11.22 0.653
3ezr EZRCyclin-dependent kinase 2 2.7.11.22 0.652
3r8p Z46Cyclin-dependent kinase 2 2.7.11.22 0.652
3say OFTGlycogen synthase kinase-3 beta 2.7.11.26 0.651
1oit HDTCyclin-dependent kinase 2 2.7.11.22 0.650
4fkq 42KCyclin-dependent kinase 2 2.7.11.22 0.650