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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
2b54 D05 Cyclin-dependent kinase 2 2.7.11.22

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
2b54 D05Cyclin-dependent kinase 2 2.7.11.22 1.040
2r3q 5SCCyclin-dependent kinase 2 2.7.11.22 0.709
3ig7 EFPCyclin-dependent kinase 2 2.7.11.22 0.704
4ek6 10KCyclin-dependent kinase 2 2.7.11.22 0.695
2r3l SCWCyclin-dependent kinase 2 2.7.11.22 0.691
2r3p 3SCCyclin-dependent kinase 2 2.7.11.22 0.689
3le6 2BZCyclin-dependent kinase 2 2.7.11.22 0.680
3igg EFQCyclin-dependent kinase 2 2.7.11.22 0.679
3lfs A07Cyclin-dependent kinase 2 2.7.11.22 0.677
2vti LZ3Cyclin-dependent kinase 2 2.7.11.22 0.674
4bgh 3I6Cyclin-dependent kinase 2 2.7.11.22 0.669
2r3j SCJCyclin-dependent kinase 2 2.7.11.22 0.665
4lyn 1YGCyclin-dependent kinase 2 2.7.11.22 0.663
1vyw 292Cyclin-dependent kinase 2 2.7.11.22 0.656
4fkj 11KCyclin-dependent kinase 2 2.7.11.22 0.656
2r3m SCXCyclin-dependent kinase 2 2.7.11.22 0.655
1gii 1PUCyclin-dependent kinase 2 2.7.11.22 0.653
1w0x OLOCyclin-dependent kinase 2 2.7.11.22 0.653
4fki 09KCyclin-dependent kinase 2 2.7.11.22 0.653
2a4l RRCCyclin-dependent kinase 2 2.7.11.22 0.652
1ckp PVBCyclin-dependent kinase 2 2.7.11.22 0.650