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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
2b1i 93A Bifunctional purine biosynthesis protein PURH 2.1.2.3

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity
Align
2b1i 93ABifunctional purine biosynthesis protein PURH 2.1.2.3 1.009
1m9n AMZBifunctional purine biosynthesis protein PURH 2.1.2.3 0.722
4a1o AMZBifunctional purine biosynthesis protein PurH 2.1.2.3 0.712
3lut NAPVoltage-gated potassium channel subunit beta-2 / 0.658
3rku NAPNADP-dependent 3-hydroxy acid dehydrogenase / 0.653