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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
2b03 TUD Phospholipase A2, major isoenzyme 3.1.1.4

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
2b03 TUDPhospholipase A2, major isoenzyme 3.1.1.4 1.166
2azz TCHPhospholipase A2, major isoenzyme 3.1.1.4 0.907
2b01 TUDPhospholipase A2, major isoenzyme 3.1.1.4 0.790
4e5i 0N9Polymerase acidic protein / 0.744
2b00 GCHPhospholipase A2, major isoenzyme 3.1.1.4 0.742
2azy CHDPhospholipase A2, major isoenzyme 3.1.1.4 0.708
1xu7 CPSCorticosteroid 11-beta-dehydrogenase isozyme 1 1.1.1.146 0.684
4at2 ASDPossible succinate dehydrogenase / 0.677
3w5q 3KLVitamin D3 receptor / 0.662
4e5f 0N7Polymerase acidic protein / 0.660
4ple CPSNuclear receptor subfamily 5 group A member 2 / 0.660
3k9v CPS1,25-dihydroxyvitamin D(3) 24-hydroxylase, mitochondrial / 0.650