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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
2azz TCH Phospholipase A2, major isoenzyme 3.1.1.4

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
2azz TCHPhospholipase A2, major isoenzyme 3.1.1.4 1.150
2b00 GCHPhospholipase A2, major isoenzyme 3.1.1.4 1.019
2b03 TUDPhospholipase A2, major isoenzyme 3.1.1.4 0.907
2azy CHDPhospholipase A2, major isoenzyme 3.1.1.4 0.777
3w5p 4OAVitamin D3 receptor / 0.728
3w5t LHPVitamin D3 receptor / 0.717
4q0a 4OAVitamin D3 receptor A / 0.708
1n83 CLRNuclear receptor ROR-alpha / 0.702
3w5q 3KLVitamin D3 receptor / 0.692
3w5r LOAVitamin D3 receptor / 0.679
3up3 XCAaceDAF-12 / 0.677
4a81 DXCMajor pollen allergen Bet v 1-A / 0.669
3gkj HC3Niemann-Pick C1 protein / 0.667
1lhu ESTSex hormone-binding globulin / 0.660
1ahi CHO7-alpha-hydroxysteroid dehydrogenase 1.1.1.159 0.657
4klr CHDFerrochelatase, mitochondrial 4.99.1.1 0.657
2mm3 CHOGastrotropin / 0.652