Binding Modes are compared using Grim.
For more information, please see the following publication:
Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65
PDB ID | HET | Uniprot Name | EC Number |
---|---|---|---|
2azy | CHD | Phospholipase A2, major isoenzyme | 3.1.1.4 |
PDB ID | HET | Uniprot Name | EC Number | Binding Mode Similarity |
Align |
---|---|---|---|---|---|
2azy | CHD | Phospholipase A2, major isoenzyme | 3.1.1.4 | 1.108 | |
2b00 | GCH | Phospholipase A2, major isoenzyme | 3.1.1.4 | 1.062 | |
2azz | TCH | Phospholipase A2, major isoenzyme | 3.1.1.4 | 0.985 | |
1n35 | CH1 | RNA-directed RNA polymerase lambda-3 | 2.7.7.48 | 0.744 | |
1n38 | U3H | RNA-directed RNA polymerase lambda-3 | 2.7.7.48 | 0.744 | |
1wet | GUN | HTH-type transcriptional repressor PurR | / | 0.744 | |
1xxj | UNC | Uricase | 1.7.3.3 | 0.744 | |
2cgw | 3C3 | Serine/threonine-protein kinase Chk1 | 2.7.11.1 | 0.744 | |
2d09 | FLV | Biflaviolin synthase CYP158A2 | / | 0.744 | |
2fzk | CTP | Aspartate carbamoyltransferase regulatory chain | / | 0.744 | |
2jey | HLO | Acetylcholinesterase | 3.1.1.7 | 0.744 | |
2oap | ANP | Type II secretion system protein (GspE-2) | / | 0.744 | |
2zs9 | ADP | Pantothenate kinase | 2.7.1.33 | 0.744 | |
3cwq | ADP | ParA family chromosome partitioning protein | / | 0.744 | |
3f8p | NAD | NADH oxidase/thioredoxin reductase | / | 0.744 | |
3f8r | NAP | NADH oxidase/thioredoxin reductase | / | 0.744 | |
3fzf | ATP | Heat shock cognate 71 kDa protein | / | 0.744 | |
3u9d | ATP | Actin, alpha skeletal muscle | / | 0.744 | |
3ypi | PGH | Triosephosphate isomerase | 5.3.1.1 | 0.744 | |
3zzn | ADP | L-lactate dehydrogenase | / | 0.744 | |
4e5l | DBH | Polymerase acidic protein | / | 0.744 | |
5bnt | NAP | Aspartate-semialdehyde dehydrogenase | 1.2.1.11 | 0.744 | |
2b03 | TUD | Phospholipase A2, major isoenzyme | 3.1.1.4 | 0.708 | |
2rlc | CHD | Choloylglycine hydrolase | 3.5.1.24 | 0.694 | |
2aa6 | STR | Mineralocorticoid receptor | / | 0.678 | |
2qo5 | CHD | Fatty acid-binding protein 10-A, liver basic | / | 0.677 | |
4ple | CPS | Nuclear receptor subfamily 5 group A member 2 | / | 0.677 | |
4q0a | 4OA | Vitamin D3 receptor A | / | 0.669 | |
1fp6 | ADP | Nitrogenase iron protein 1 | 1.18.6.1 | 0.660 | |
2hru | ADP | Phosphoribosylformylglycinamidine synthase subunit PurL | / | 0.660 | |
2hs4 | ACP | Phosphoribosylformylglycinamidine synthase subunit PurL | / | 0.660 | |
2puf | GUN | HTH-type transcriptional repressor PurR | / | 0.660 | |
2xtn | GTP | GTPase IMAP family member 2 | / | 0.660 | |
3fwy | ADP | Light-independent protochlorophyllide reductase iron-sulfur ATP-binding protein | / | 0.660 | |
3kjg | ADP | CO dehydrogenase/acetyl-CoA synthase complex, accessory protein CooC | / | 0.660 | |
4nxv | GDP | Mitochondrial dynamics protein MID51 | / | 0.660 | |
4nxx | GDP | Mitochondrial dynamics protein MID51 | / | 0.660 | |
4o3m | ADP | Bloom syndrome protein | 3.6.4.12 | 0.660 | |
3f3y | 4OA | Bile salt sulfotransferase | 2.8.2.14 | 0.659 |