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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
2ayr L4G Estrogen receptor

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
2ayr L4GEstrogen receptor / 1.487
1err RALEstrogen receptor / 0.885
1xqc AEJEstrogen receptor / 0.830
3q95 ESLEstrogen receptor / 0.776
1uom PTIEstrogen receptor / 0.764
2pog WSTEstrogen receptor / 0.747
2jfa RALEstrogen receptor / 0.744
4iw6 1GUEstrogen receptor / 0.738
5dx3 ESTEstrogen receptor / 0.715
1xpc AITEstrogen receptor / 0.714
2ouz C3DEstrogen receptor / 0.702
1qkn RALEstrogen receptor beta / 0.698
4iv4 1GSEstrogen receptor / 0.697
2jf9 OHTEstrogen receptor / 0.689
3erd DESEstrogen receptor / 0.689
1yin CM3Estrogen receptor / 0.687
1sj0 E4DEstrogen receptor / 0.681
2fsz OHTEstrogen receptor beta / 0.677
2gpu OHTEstrogen-related receptor gamma / 0.674
2qe4 JJ3Estrogen receptor / 0.665
1g7u PEP2-dehydro-3-deoxyphosphooctonate aldolase 2.5.1.55 0.660
4e5f 0N7Polymerase acidic protein / 0.660
4e5i 0N9Polymerase acidic protein / 0.660
1x7e 244Estrogen receptor / 0.655
1xp1 AIHEstrogen receptor / 0.652