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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
2ay5 IOP Aromatic-amino-acid aminotransferase 2.6.1.57

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
2ay5 IOPAromatic-amino-acid aminotransferase 2.6.1.57 0.859
2ay2 CXPAromatic-amino-acid aminotransferase 2.6.1.57 0.737
2ay8 4TBAromatic-amino-acid aminotransferase 2.6.1.57 0.715
2ay3 MPPAromatic-amino-acid aminotransferase 2.6.1.57 0.682
1toi HCIAspartate aminotransferase 2.6.1.1 0.679
1toj HCIAspartate aminotransferase 2.6.1.1 0.674
1u4s BIHL-lactate dehydrogenase 1.1.1.27 0.658