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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
2ay2 CXP Aromatic-amino-acid aminotransferase 2.6.1.57

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
2ay2 CXPAromatic-amino-acid aminotransferase 2.6.1.57 0.935
2ay5 IOPAromatic-amino-acid aminotransferase 2.6.1.57 0.737
1toi HCIAspartate aminotransferase 2.6.1.1 0.710
2ay3 MPPAromatic-amino-acid aminotransferase 2.6.1.57 0.696
1toj HCIAspartate aminotransferase 2.6.1.1 0.680
2ay8 4TBAromatic-amino-acid aminotransferase 2.6.1.57 0.673
1arg PPDAspartate aminotransferase 2.6.1.1 0.661
7dfr FOLDihydrofolate reductase 1.5.1.3 0.650