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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
2avi BTN Avidin

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
2avi BTNAvidin / 1.037
4bcs BTNAvidin-related protein 4/5 / 0.843
2c4i BTNAvidin / 0.806
2uyw BTNAvd protein / 0.792
2jgs BTNAvidin / 0.754
1ij8 BNIAvidin / 0.743
4bj8 BTNAvidin / 0.741
3vhh VHHAvidin / 0.736
1avd BTNAvidin / 0.734
2izh BTNStreptavidin / 0.730
4yvb BTNStreptavidin / 0.730
1mk5 BTNStreptavidin / 0.726
1swp BTQStreptavidin / 0.726
3t2w BTNAvidin/streptavidin / 0.726
3vhi VHIAvidin / 0.726
3ew2 BTNHypothetical conserved protein / 0.723
2fhl BNIAvidin-related protein 4/5 / 0.722
2zsc BTNTamavidin2 / 0.722
1swn BTNStreptavidin / 0.718
2rte BTNStreptavidin / 0.716
3rdq DTBStreptavidin / 0.715
2uz2 BTNAvd protein / 0.713
1y52 BTNAvidin-related protein 4/5 / 0.707
3ry2 BTNStreptavidin / 0.701
1n9m BTNStreptavidin / 0.698
4ggz BTNBll1558 protein / 0.698
1nqm BTNStreptavidin / 0.697
1stp BTNStreptavidin / 0.696
1swp BTNStreptavidin / 0.695
3vgw NVZAvidin / 0.695
1lcz BH7Streptavidin / 0.694
2rtp IMIStreptavidin / 0.690
1ndj BTNStreptavidin / 0.687
2rtr IMIStreptavidin / 0.687
2rto IMIStreptavidin / 0.686
1lel BH7Avidin / 0.682
3wyp BSOStreptavidin / 0.682
4gda BTNStreptavidin / 0.682
3vhm NPKAvidin / 0.681
2izl IMIStreptavidin / 0.680
1lcw SHMStreptavidin / 0.677
3wzn BTNStreptavidin / 0.677
2izf BTNStreptavidin / 0.676
2rtn IMIStreptavidin / 0.676
2izi BTNStreptavidin / 0.673
2rtd BTNStreptavidin / 0.673
1i9h BNIStreptavidin / 0.670
2izj BTNStreptavidin / 0.667
1swr BTNStreptavidin / 0.666
2rtg BTNStreptavidin / 0.665
2izg BTNStreptavidin / 0.659
1nc9 IMIStreptavidin / 0.658
2rtf BTNStreptavidin / 0.658
1df8 BTNStreptavidin / 0.656
2y3f BTNStreptavidin / 0.655
1n43 BTNStreptavidin / 0.653
1swg BTNStreptavidin / 0.650
3wyq BTNStreptavidin / 0.650